Allow individual label images to be converted #135
+106
−2
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This loosens some of the restrictions on the Zarr hierarchy, and adds a
-foption so that metadata can be copied from an existing image file.I'd expect
raw2ometiff input.zarr/0/labels/abc_mask/ mask.ome.tiff -f /path/to/original/image/fileto be the pattern to use here, which would convert a single label image to a single OME-TIFF. If there are multiple label images underinput.zarr/0/labels/, they would each need to be converted separately. The use of-fmeans thatinput.zarr/OME/METADATA.ome.xmldoes not need to exist (and in fact, would be ignored if it did).Fake data can easily be used to test the
-foption. If any of the XYZCT dimensions are incorrect, an informative exception should be thrown.Assigning just @erindiel for now to make sure the required functionality has been captured correctly; can assign code reviewers afterwards.