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installer: only uninstall packages managed by this module (#23)
Allow managed and unmanaged packages to coexist. This PR introduces a state file that keeps track of the module's modifications, so they can be managed separately from imperatively introduced modifications. A new uninstallUnmanagedPackages option has been added. When set to true (default), unmanaged flatpaks won't be uninstalled on activation. When set to false, all flatpacks will be overridden on module activation.
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