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Add CRAN package registry #22331
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Add CRAN package registry.
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Original file line number | Diff line number | Diff line change |
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--- | ||
date: "2023-01-01T00:00:00+00:00" | ||
title: "CRAN Packages Repository" | ||
slug: "cran" | ||
draft: false | ||
toc: false | ||
menu: | ||
sidebar: | ||
parent: "packages" | ||
name: "CRAN" | ||
weight: 35 | ||
identifier: "cran" | ||
--- | ||
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# CRAN Packages Repository | ||
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Publish [R](https://www.r-project.org/) packages to a [CRAN](https://cran.r-project.org/)-like registry for your user or organization. | ||
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**Table of Contents** | ||
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{{< toc >}} | ||
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## Requirements | ||
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To work with the CRAN package registry, you need to install [R](https://cran.r-project.org/). | ||
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## Configuring the package registry | ||
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To register the package registry you need to add it to `Rprofile.site`, either on the system-level, user-level (`~/.Rprofile`) or project-level: | ||
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``` | ||
options("repos" = c(getOption("repos"), c(gitea="https://gitea.example.com/api/packages/{owner}/cran"))) | ||
``` | ||
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| Parameter | Description | | ||
| --------- | ----------- | | ||
| `owner` | The owner of the package. | | ||
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If you need to provide credentials, you may embed them as part of the url (`https://user:password@gitea.example.com/...`). | ||
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## Publish a package | ||
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To publish a R package, perform a HTTP `PUT` operation with the package content in the request body. | ||
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Source packages: | ||
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``` | ||
PUT https://gitea.example.com/api/packages/{owner}/cran/src | ||
``` | ||
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| Parameter | Description | | ||
| --------- | ----------- | | ||
| `owner` | The owner of the package. | | ||
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Binary packages: | ||
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``` | ||
PUT https://gitea.example.com/api/packages/{owner}/cran/bin?platform={platform}&rversion={rversion} | ||
``` | ||
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| Parameter | Description | | ||
| ---------- | ----------- | | ||
| `owner` | The owner of the package. | | ||
| `platform` | The name of the platform. | | ||
| `rversion` | The R version of the binary. | | ||
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For example: | ||
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```shell | ||
curl --user your_username:your_password_or_token \ | ||
--upload-file path/to/package.zip \ | ||
https://gitea.example.com/api/packages/testuser/cran/bin?platform=windows&rversion=4.2 | ||
``` | ||
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You cannot publish a package if a package of the same name and version already exists. You must delete the existing package first. | ||
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## Install a package | ||
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To install a R package from the package registry, execute the following command: | ||
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```shell | ||
install.packages("{package_name}") | ||
``` | ||
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| Parameter | Description | | ||
| -------------- | ----------- | | ||
| `package_name` | The package name. | | ||
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For example: | ||
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```shell | ||
install.packages("testpackage") | ||
``` |
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Original file line number | Diff line number | Diff line change |
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// Copyright 2023 The Gitea Authors. All rights reserved. | ||
// SPDX-License-Identifier: MIT | ||
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package cran | ||
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import ( | ||
"context" | ||
"strconv" | ||
"strings" | ||
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"code.gitea.io/gitea/models/db" | ||
"code.gitea.io/gitea/models/packages" | ||
cran_module "code.gitea.io/gitea/modules/packages/cran" | ||
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"xorm.io/builder" | ||
) | ||
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type SearchOptions struct { | ||
OwnerID int64 | ||
FileType string | ||
Platform string | ||
RVersion string | ||
Filename string | ||
} | ||
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func (opts *SearchOptions) toConds() builder.Cond { | ||
var cond builder.Cond = builder.Eq{ | ||
"package.type": packages.TypeCran, | ||
"package.owner_id": opts.OwnerID, | ||
"package_version.is_internal": false, | ||
} | ||
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if opts.Filename != "" { | ||
cond = cond.And(builder.Eq{"package_file.lower_name": strings.ToLower(opts.Filename)}) | ||
} | ||
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var propsCond builder.Cond = builder.Eq{ | ||
"package_property.ref_type": packages.PropertyTypeFile, | ||
} | ||
propsCond = propsCond.And(builder.Expr("package_property.ref_id = package_file.id")) | ||
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count := 1 | ||
propsCondBlock := builder.Eq{"package_property.name": cran_module.PropertyType}.And(builder.Eq{"package_property.value": opts.FileType}) | ||
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if opts.Platform != "" { | ||
count += 2 | ||
propsCondBlock = propsCondBlock. | ||
Or(builder.Eq{"package_property.name": cran_module.PropertyPlatform}.And(builder.Eq{"package_property.value": opts.Platform})). | ||
Or(builder.Eq{"package_property.name": cran_module.PropertyRVersion}.And(builder.Eq{"package_property.value": opts.RVersion})) | ||
} | ||
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propsCond = propsCond.And(propsCondBlock) | ||
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cond = cond.And(builder.Eq{ | ||
strconv.Itoa(count): builder.Select("COUNT(*)").Where(propsCond).From("package_property"), | ||
}) | ||
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return cond | ||
} | ||
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func SearchLatestVersions(ctx context.Context, opts *SearchOptions) ([]*packages.PackageVersion, error) { | ||
sess := db.GetEngine(ctx). | ||
Table("package_version"). | ||
Select("package_version.*"). | ||
Join("LEFT", "package_version pv2", builder.Expr("package_version.package_id = pv2.package_id AND pv2.is_internal = ? AND (package_version.created_unix < pv2.created_unix OR (package_version.created_unix = pv2.created_unix AND package_version.id < pv2.id))", false)). | ||
Join("INNER", "package", "package.id = package_version.package_id"). | ||
Join("INNER", "package_file", "package_file.version_id = package_version.id"). | ||
Where(opts.toConds().And(builder.Expr("pv2.id IS NULL"))). | ||
Asc("package.name") | ||
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pvs := make([]*packages.PackageVersion, 0, 10) | ||
return pvs, sess.Find(&pvs) | ||
} | ||
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func SearchFile(ctx context.Context, opts *SearchOptions) (*packages.PackageFile, error) { | ||
sess := db.GetEngine(ctx). | ||
Table("package_version"). | ||
Select("package_file.*"). | ||
Join("INNER", "package", "package.id = package_version.package_id"). | ||
Join("INNER", "package_file", "package_file.version_id = package_version.id"). | ||
Where(opts.toConds()) | ||
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pf := &packages.PackageFile{} | ||
if has, err := sess.Get(pf); err != nil { | ||
return nil, err | ||
} else if !has { | ||
return nil, packages.ErrPackageFileNotExist | ||
} | ||
return pf, nil | ||
} |
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Happy with that wording, thanks all for hearing me out ❤️