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  1. pypage pypage Public

    python implementation of the PAGE algorithm

    Python 15 2

  2. SwitchFinder SwitchFinder Public

    Python 14 1

  3. pyteiser pyteiser Public

    Python implementation of TEISER also capable of using SHAPE structural probing data

    Python 12 9

  4. Ribolog Ribolog Public

    A suite of regression-based tools for ribosome profiling data analysis

    Jupyter Notebook 6 1

  5. APAlog APAlog Public

    A tool for quantification of alternative poly A usage

    R 3 1

  6. Basenji-Pytorch Basenji-Pytorch Public

    Jupyter Notebook 3 1

Repositories

Showing 10 of 28 repositories
  • lorna-sh Public

    LoRNA-SH: A long-context RNA foundation model for predicting transcriptome architecture. Training pipeline and model weights.

    goodarzilab/lorna-sh’s past year of commit activity
    Python 2 MIT 2 0 0 Updated Oct 21, 2024
  • cdsFM Public

    cdsFM: Repository of Codon-based Foundation Models

    goodarzilab/cdsFM’s past year of commit activity
    Python 2 MIT 0 4 0 Updated Oct 15, 2024
  • Pan-oncRNA Public
    goodarzilab/Pan-oncRNA’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jul 17, 2024
  • SwitchFinder Public
    goodarzilab/SwitchFinder’s past year of commit activity
    Python 14 MIT 1 2 0 Updated Jul 16, 2024
  • goodarzilab.github.io Public

    Lab website

    goodarzilab/goodarzilab.github.io’s past year of commit activity
    HTML 0 1 0 0 Updated Jul 15, 2024
  • RBP_modules Public
    goodarzilab/RBP_modules’s past year of commit activity
    R 0 GPL-3.0 1 0 0 Updated Jun 6, 2024
  • pypage Public

    python implementation of the PAGE algorithm

    goodarzilab/pypage’s past year of commit activity
    Python 15 MIT 2 17 0 Updated Apr 30, 2024
  • DMS-tutorial Public

    Assorted scripts for processing DMS-Seq data

    goodarzilab/DMS-tutorial’s past year of commit activity
    HTML 2 0 0 0 Updated Jan 31, 2024
  • Abe Public
    goodarzilab/Abe’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 4, 2024
  • OpenTrons_2 Public

    Repository for OpenTrons code

    goodarzilab/OpenTrons_2’s past year of commit activity
    Python 0 MIT 0 0 0 Updated May 28, 2023
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