Skip to content

Issues: google-deepmind/alphafold3

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

17 Open 130 Closed
17 Open 130 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Run templates does not work with external MSA
#169 opened Dec 3, 2024 by sky1ove
Is it possible to include data json file in Alphafold Server? question Further information is requested
#168 opened Dec 3, 2024 by sky1ove
example of custom templates question Further information is requested
#167 opened Dec 3, 2024 by ShuhaoGithub
1
installing with conda, encountered compatibility issues. setup Problem with installation or setting things up
#166 opened Dec 3, 2024 by pdxooo
GPU Memory Overflow During Sequential Complex Inference question Further information is requested
#165 opened Dec 3, 2024 by abiadak
1
Broken C-Br (or C-Cl) bond within ligands question Further information is requested
#163 opened Dec 3, 2024 by taiyocching
Covalent ligands: (non)leaving atoms and unrealistic bond lengths question Further information is requested
#159 opened Dec 2, 2024 by alephreish
6
When running with docker, ordinary users may encounter permission problems when creating the output directory. You need to manually mkdir -p $HOME/alphafold3/input $HOME/alphafold3/output chmod -R 777 $HOME/alphafold3/output question Further information is requested setup Problem with installation or setting things up
#157 opened Dec 2, 2024 by hezhiqiang8909
1
AF3 unable to predict covalent bonds between DNA and protein enhancement New feature or request
#152 opened Dec 1, 2024 by alchemistcai
1
First MSA sequence is not the {query_sequence=}' bug Something isn't working
#132 opened Nov 27, 2024 by James-lin9
3
Increasing degradation of ligand structures as number of ligands increases question Further information is requested
#127 opened Nov 26, 2024 by smg3d
1
With multiple ligand copies (SMILES), sometimes get "Failed to construct RDKit reference structure" question Further information is requested third party tool Issue with a third party tool
#102 opened Nov 21, 2024 by smg3d
4
Is there a way to get per-residue embeddings from the model? enhancement New feature or request question Further information is requested
#70 opened Nov 18, 2024 by GUMI-QXP
3
Model does not run correctly on CUDA Capability 7.x GPUs bug Something isn't working
#59 opened Nov 15, 2024 by joshabramson
30
rasa calculation failed bug Something isn't working
#55 opened Nov 15, 2024 by vecos1990
1
Question about Post-Translational Modifications (PTMs) in Protein Prediction bug Something isn't working question Further information is requested
#54 opened Nov 15, 2024 by wtni-gidle
5
First issue! Just want to say thank you! good first issue Good for newcomers
#1 opened Nov 11, 2024 by WillHua127
11
ProTip! Follow long discussions with comments:>50.