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fix: Ensure complete reading of multi-member .gz FASTA files #14

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merged 1 commit into from
Feb 27, 2024
Merged

fix: Ensure complete reading of multi-member .gz FASTA files #14

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4 changes: 2 additions & 2 deletions src/main.rs
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Original file line number Diff line number Diff line change
Expand Up @@ -25,7 +25,7 @@ use noodles::{bam, fasta, sam};

use fxhash::FxHashMap;

use flate2::read::GzDecoder;
use flate2::read::MultiGzDecoder;
use flate2::write::GzEncoder;

use std::fs::File;
Expand Down Expand Up @@ -65,7 +65,7 @@ fn run(
let mut ref_reader = {
let f = File::open(&reference_path).unwrap();
let r: Box<dyn Read> = if reference_path.ends_with(".gz") {
Box::new(GzDecoder::new(f))
Box::new(MultiGzDecoder::new(f))
} else {
Box::new(f)
};
Expand Down