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[tune](deps): Bump h5py from 3.2.1 to 3.3.0 in /python/requirements/tune #13

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@dependabot dependabot bot commented on behalf of github Jun 23, 2021

Bumps h5py from 3.2.1 to 3.3.0.

Commits
  • cc34c58 Merge pull request #1911 from takluyver/rever-3.3
  • fda5187 End of file fixer
  • 2524090 Polish release notes
  • 9d29f8b Correct filename for whatsnew page
  • 75d0059 Updated CHANGELOG for 3.3.0
  • b064819 bumped version to 3.3.0
  • 14a01ef Updated authorship for 3.3.0
  • 266ffae Merge pull request #1905 from takluyver/vds-set-virtual-sooner
  • 1a415a5 Protect virtual dataset filename translation better
  • c731c3d Merge pull request #1839 from takluyver/deprecate-default-file-mode-2
  • Additional commits viewable in compare view

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Bumps [h5py](https://github.com/h5py/h5py) from 3.2.1 to 3.3.0.
- [Release notes](https://github.com/h5py/h5py/releases)
- [Changelog](https://github.com/h5py/h5py/blob/master/docs/release_guide.rst)
- [Commits](h5py/h5py@3.2.1...3.3.0)

---
updated-dependencies:
- dependency-name: h5py
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot added the dependencies Pull requests that update a dependency file label Jun 23, 2021
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dependabot bot commented on behalf of github Aug 28, 2021

Superseded by #25.

@dependabot dependabot bot closed this Aug 28, 2021
@dependabot dependabot bot deleted the dependabot/pip/python/requirements/tune/h5py-3.3.0 branch August 28, 2021 07:09
gramhagen pushed a commit that referenced this pull request Aug 12, 2022
We encountered SIGSEGV when running Python test `python/ray/tests/test_failure_2.py::test_list_named_actors_timeout`. The stack is:

```
#0  0x00007fffed30f393 in std::basic_string<char, std::char_traits<char>, std::allocator<char> >::basic_string(std::string const&) ()
   from /lib64/libstdc++.so.6
#1  0x00007fffee707649 in ray::RayLog::GetLoggerName() () from /home/admin/dev/Arc/merge/ray/python/ray/_raylet.so
#2  0x00007fffee70aa90 in ray::SpdLogMessage::Flush() () from /home/admin/dev/Arc/merge/ray/python/ray/_raylet.so
#3  0x00007fffee70af28 in ray::RayLog::~RayLog() () from /home/admin/dev/Arc/merge/ray/python/ray/_raylet.so
#4  0x00007fffee2b570d in ray::asio::testing::(anonymous namespace)::DelayManager::Init() [clone .constprop.0] ()
   from /home/admin/dev/Arc/merge/ray/python/ray/_raylet.so
#5  0x00007fffedd0d95a in _GLOBAL__sub_I_asio_chaos.cc () from /home/admin/dev/Arc/merge/ray/python/ray/_raylet.so
#6  0x00007ffff7fe282a in call_init.part () from /lib64/ld-linux-x86-64.so.2
#7  0x00007ffff7fe2931 in _dl_init () from /lib64/ld-linux-x86-64.so.2
#8  0x00007ffff7fe674c in dl_open_worker () from /lib64/ld-linux-x86-64.so.2
#9  0x00007ffff7b82e79 in _dl_catch_exception () from /lib64/libc.so.6
#10 0x00007ffff7fe5ffe in _dl_open () from /lib64/ld-linux-x86-64.so.2
#11 0x00007ffff7d5f39c in dlopen_doit () from /lib64/libdl.so.2
#12 0x00007ffff7b82e79 in _dl_catch_exception () from /lib64/libc.so.6
#13 0x00007ffff7b82f13 in _dl_catch_error () from /lib64/libc.so.6
#14 0x00007ffff7d5fb09 in _dlerror_run () from /lib64/libdl.so.2
#15 0x00007ffff7d5f42a in dlopen@@GLIBC_2.2.5 () from /lib64/libdl.so.2
#16 0x00007fffef04d330 in py_dl_open (self=<optimized out>, args=<optimized out>)
    at /tmp/python-build.20220507135524.257789/Python-3.7.11/Modules/_ctypes/callproc.c:1369
```

The root cause is that when loading `_raylet.so`, `static DelayManager _delay_manager` is initialized and `RAY_LOG(ERROR) << "RAY_testing_asio_delay_us is set to " << delay_env;` is executed. However, the static variables declared in `logging.cc` are not initialized yet (in this case, `std::string RayLog::logger_name_ = "ray_log_sink"`).

It's better not to rely on the initialization order of static variables in different compilation units because it's not guaranteed. I propose to change all `RAY_LOG`s to `std::cerr` in `DelayManager::Init()`.

The crash happens in Ant's internal codebase. Not sure why this test case passes in the community version though.

BTW, I've tried different approaches:

1. Using a static local variable in `get_delay_us` and remove the global variable. This doesn't work because `init()` needs to access the variable as well.
2. Defining the global variable as type `std::unique_ptr<DelayManager>` and initialize it in `get_delay_us`. This works but it requires a lock to be thread-safe.
gramhagen pushed a commit that referenced this pull request Aug 15, 2022
We encountered SIGSEGV when running Python test `python/ray/tests/test_failure_2.py::test_list_named_actors_timeout`. The stack is:

```
#0  0x00007fffed30f393 in std::basic_string<char, std::char_traits<char>, std::allocator<char> >::basic_string(std::string const&) ()
   from /lib64/libstdc++.so.6
#1  0x00007fffee707649 in ray::RayLog::GetLoggerName() () from /home/admin/dev/Arc/merge/ray/python/ray/_raylet.so
#2  0x00007fffee70aa90 in ray::SpdLogMessage::Flush() () from /home/admin/dev/Arc/merge/ray/python/ray/_raylet.so
#3  0x00007fffee70af28 in ray::RayLog::~RayLog() () from /home/admin/dev/Arc/merge/ray/python/ray/_raylet.so
#4  0x00007fffee2b570d in ray::asio::testing::(anonymous namespace)::DelayManager::Init() [clone .constprop.0] ()
   from /home/admin/dev/Arc/merge/ray/python/ray/_raylet.so
#5  0x00007fffedd0d95a in _GLOBAL__sub_I_asio_chaos.cc () from /home/admin/dev/Arc/merge/ray/python/ray/_raylet.so
#6  0x00007ffff7fe282a in call_init.part () from /lib64/ld-linux-x86-64.so.2
#7  0x00007ffff7fe2931 in _dl_init () from /lib64/ld-linux-x86-64.so.2
#8  0x00007ffff7fe674c in dl_open_worker () from /lib64/ld-linux-x86-64.so.2
#9  0x00007ffff7b82e79 in _dl_catch_exception () from /lib64/libc.so.6
#10 0x00007ffff7fe5ffe in _dl_open () from /lib64/ld-linux-x86-64.so.2
#11 0x00007ffff7d5f39c in dlopen_doit () from /lib64/libdl.so.2
#12 0x00007ffff7b82e79 in _dl_catch_exception () from /lib64/libc.so.6
#13 0x00007ffff7b82f13 in _dl_catch_error () from /lib64/libc.so.6
#14 0x00007ffff7d5fb09 in _dlerror_run () from /lib64/libdl.so.2
#15 0x00007ffff7d5f42a in dlopen@@GLIBC_2.2.5 () from /lib64/libdl.so.2
#16 0x00007fffef04d330 in py_dl_open (self=<optimized out>, args=<optimized out>)
    at /tmp/python-build.20220507135524.257789/Python-3.7.11/Modules/_ctypes/callproc.c:1369
```

The root cause is that when loading `_raylet.so`, `static DelayManager _delay_manager` is initialized and `RAY_LOG(ERROR) << "RAY_testing_asio_delay_us is set to " << delay_env;` is executed. However, the static variables declared in `logging.cc` are not initialized yet (in this case, `std::string RayLog::logger_name_ = "ray_log_sink"`).

It's better not to rely on the initialization order of static variables in different compilation units because it's not guaranteed. I propose to change all `RAY_LOG`s to `std::cerr` in `DelayManager::Init()`.

The crash happens in Ant's internal codebase. Not sure why this test case passes in the community version though.

BTW, I've tried different approaches:

1. Using a static local variable in `get_delay_us` and remove the global variable. This doesn't work because `init()` needs to access the variable as well.
2. Defining the global variable as type `std::unique_ptr<DelayManager>` and initialize it in `get_delay_us`. This works but it requires a lock to be thread-safe. 

Signed-off-by: Scott Graham <scgraham@microsoft.com>
gramhagen pushed a commit that referenced this pull request Aug 15, 2022
We encountered SIGSEGV when running Python test `python/ray/tests/test_failure_2.py::test_list_named_actors_timeout`. The stack is:

```
#0  0x00007fffed30f393 in std::basic_string<char, std::char_traits<char>, std::allocator<char> >::basic_string(std::string const&) ()
   from /lib64/libstdc++.so.6
#1  0x00007fffee707649 in ray::RayLog::GetLoggerName() () from /home/admin/dev/Arc/merge/ray/python/ray/_raylet.so
#2  0x00007fffee70aa90 in ray::SpdLogMessage::Flush() () from /home/admin/dev/Arc/merge/ray/python/ray/_raylet.so
#3  0x00007fffee70af28 in ray::RayLog::~RayLog() () from /home/admin/dev/Arc/merge/ray/python/ray/_raylet.so
#4  0x00007fffee2b570d in ray::asio::testing::(anonymous namespace)::DelayManager::Init() [clone .constprop.0] ()
   from /home/admin/dev/Arc/merge/ray/python/ray/_raylet.so
#5  0x00007fffedd0d95a in _GLOBAL__sub_I_asio_chaos.cc () from /home/admin/dev/Arc/merge/ray/python/ray/_raylet.so
#6  0x00007ffff7fe282a in call_init.part () from /lib64/ld-linux-x86-64.so.2
#7  0x00007ffff7fe2931 in _dl_init () from /lib64/ld-linux-x86-64.so.2
#8  0x00007ffff7fe674c in dl_open_worker () from /lib64/ld-linux-x86-64.so.2
#9  0x00007ffff7b82e79 in _dl_catch_exception () from /lib64/libc.so.6
#10 0x00007ffff7fe5ffe in _dl_open () from /lib64/ld-linux-x86-64.so.2
#11 0x00007ffff7d5f39c in dlopen_doit () from /lib64/libdl.so.2
#12 0x00007ffff7b82e79 in _dl_catch_exception () from /lib64/libc.so.6
#13 0x00007ffff7b82f13 in _dl_catch_error () from /lib64/libc.so.6
#14 0x00007ffff7d5fb09 in _dlerror_run () from /lib64/libdl.so.2
#15 0x00007ffff7d5f42a in dlopen@@GLIBC_2.2.5 () from /lib64/libdl.so.2
#16 0x00007fffef04d330 in py_dl_open (self=<optimized out>, args=<optimized out>)
    at /tmp/python-build.20220507135524.257789/Python-3.7.11/Modules/_ctypes/callproc.c:1369
```

The root cause is that when loading `_raylet.so`, `static DelayManager _delay_manager` is initialized and `RAY_LOG(ERROR) << "RAY_testing_asio_delay_us is set to " << delay_env;` is executed. However, the static variables declared in `logging.cc` are not initialized yet (in this case, `std::string RayLog::logger_name_ = "ray_log_sink"`).

It's better not to rely on the initialization order of static variables in different compilation units because it's not guaranteed. I propose to change all `RAY_LOG`s to `std::cerr` in `DelayManager::Init()`.

The crash happens in Ant's internal codebase. Not sure why this test case passes in the community version though.

BTW, I've tried different approaches:

1. Using a static local variable in `get_delay_us` and remove the global variable. This doesn't work because `init()` needs to access the variable as well.
2. Defining the global variable as type `std::unique_ptr<DelayManager>` and initialize it in `get_delay_us`. This works but it requires a lock to be thread-safe.
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