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Upgrade env on 2018-07-17 #129

Merged
merged 2 commits into from
Jul 18, 2018
Merged

Upgrade env on 2018-07-17 #129

merged 2 commits into from
Jul 18, 2018

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dhimmel
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@dhimmel dhimmel commented Jul 17, 2018

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@zietzm
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zietzm commented Jul 18, 2018

Test failure shows that pytest is incompatible with Python 3.7

UnsatisfiableError: The following specifications were found to be in conflict:
  - pytest=3.6.3 -> python[version='>=3.6,<3.7.0a0'] -> readline=6.2
  - pytest=3.6.3 -> python[version='>=3.6,<3.7.0a0'] -> sqlite=3.13
  - pytest=3.6.3 -> python[version='>=3.6,<3.7.0a0'] -> tk=8.5
  - python=3.7.0
Use "conda info <package>" to see the dependencies for each package.

This seems to be something they are working on
pytest-dev/pytest#3652

Perhaps this PR should remain open a while as Pytest updates to be compatible with 3.7

@dhimmel dhimmel changed the title Upgrade env on 2018-07-17. Python 3.7 Upgrade env on 2018-07-17 Jul 18, 2018
@dhimmel dhimmel merged commit 9b83422 into greenelab:master Jul 18, 2018
@dhimmel dhimmel deleted the python37 branch July 18, 2018 14:17
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dhimmel commented Jul 18, 2018

Consider a bulk_pipeline module rename.

dhimmel added a commit to hetio/hetmatpy that referenced this pull request Nov 7, 2018
@dhimmel
Upgrade environment.yml on 2018-07-17
2d33991 
Merges greenelab/connectivity-search-analyses#129

* Python upgraded to 3.6.6 rather than 3.7.0 due to a pytest incompatibility.
* Pandas upgraded to 0.23 which should respect dictionary order when creating columns.
dhimmel added a commit to hetio/hetmatpy that referenced this pull request Nov 7, 2018
@dhimmel
Upgrade environment.yml on 2018-07-17
53ea8a3 
Merges greenelab/connectivity-search-analyses#129

* Python upgraded to 3.6.6 rather than 3.7.0 due to a pytest incompatibility.
* Pandas upgraded to 0.23 which should respect dictionary order when creating columns.
dhimmel added a commit to hetio/hetmatpy that referenced this pull request Nov 7, 2018
@dhimmel
Upgrade environment.yml on 2018-07-17
29f8b55 
Merges greenelab/connectivity-search-analyses#129

* Python upgraded to 3.6.6 rather than 3.7.0 due to a pytest incompatibility.
* Pandas upgraded to 0.23 which should respect dictionary order when creating columns.
dhimmel added a commit to hetio/hetmatpy that referenced this pull request Nov 7, 2018
@dhimmel
Upgrade environment.yml on 2018-07-17
955b657 
Merges greenelab/connectivity-search-analyses#129

* Python upgraded to 3.6.6 rather than 3.7.0 due to a pytest incompatibility.
* Pandas upgraded to 0.23 which should respect dictionary order when creating columns.
dhimmel added a commit to hetio/hetmatpy that referenced this pull request Nov 7, 2018
@dhimmel
Upgrade environment.yml on 2018-07-17
ed82489 
Merges greenelab/connectivity-search-analyses#129

* Python upgraded to 3.6.6 rather than 3.7.0 due to a pytest incompatibility.
* Pandas upgraded to 0.23 which should respect dictionary order when creating columns.
dhimmel added a commit to hetio/hetmatpy that referenced this pull request Nov 7, 2018
@dhimmel
Upgrade environment.yml on 2018-07-17
14bda2d 
Merges greenelab/connectivity-search-analyses#129

* Python upgraded to 3.6.6 rather than 3.7.0 due to a pytest incompatibility.
* Pandas upgraded to 0.23 which should respect dictionary order when creating columns.
dhimmel added a commit to hetio/hetmatpy that referenced this pull request Nov 7, 2018
@dhimmel
Upgrade environment.yml on 2018-07-17
bec6495 
Merges greenelab/connectivity-search-analyses#129

* Python upgraded to 3.6.6 rather than 3.7.0 due to a pytest incompatibility.
* Pandas upgraded to 0.23 which should respect dictionary order when creating columns.

Former-commit-id: greenelab/connectivity-search-analyses@4d00492
dhimmel added a commit to hetio/hetmatpy that referenced this pull request Nov 7, 2018
@dhimmel
Upgrade environment.yml on 2018-07-17
5d3cffc 
Merges greenelab/connectivity-search-analyses#129

* Python upgraded to 3.6.6 rather than 3.7.0 due to a pytest incompatibility.
* Pandas upgraded to 0.23 which should respect dictionary order when creating columns.

Former-commit-id: greenelab/connectivity-search-analyses@4d00492
dhimmel added a commit to hetio/hetmatpy that referenced this pull request Nov 7, 2018
@dhimmel
Upgrade environment.yml on 2018-07-17
e8458d1 
Merges greenelab/connectivity-search-analyses#129

* Python upgraded to 3.6.6 rather than 3.7.0 due to a pytest incompatibility.
* Pandas upgraded to 0.23 which should respect dictionary order when creating columns.

Former-commit-url: greenelab/connectivity-search-analyses@4d00492
dhimmel added a commit to hetio/hetmatpy that referenced this pull request Nov 7, 2018
@dhimmel
Upgrade environment.yml on 2018-07-17
8ce3642 
Merges greenelab/connectivity-search-analyses#129

* Python upgraded to 3.6.6 rather than 3.7.0 due to a pytest incompatibility.
* Pandas upgraded to 0.23 which should respect dictionary order when creating columns.

Former-commit-url: https://github.com/greenelab/hetmech/commit/{hash[:2]}⛷{hash[2:]}
dhimmel added a commit to hetio/hetmatpy that referenced this pull request Nov 7, 2018
@dhimmel
Upgrade environment.yml on 2018-07-17
76dad46 
Merges greenelab/connectivity-search-analyses#129

* Python upgraded to 3.6.6 rather than 3.7.0 due to a pytest incompatibility.
* Pandas upgraded to 0.23 which should respect dictionary order when creating columns.

Former-commit-url: https://github.com/greenelab/hetmech/commit/9b⛷83422de2a73008743fd25059a027d5eaa53b8a
dhimmel added a commit to hetio/hetmatpy that referenced this pull request Nov 7, 2018
@dhimmel
Upgrade environment.yml on 2018-07-17
4780322 
Merges greenelab/connectivity-search-analyses#129

* Python upgraded to 3.6.6 rather than 3.7.0 due to a pytest incompatibility.
* Pandas upgraded to 0.23 which should respect dictionary order when creating columns.

Former-commit-url: greenelab/connectivity-search-analyses@9b83422
dhimmel added a commit to hetio/hetmatpy that referenced this pull request Nov 7, 2018
@dhimmel
Upgrade environment.yml on 2018-07-17
0b0353f 
Merges greenelab/connectivity-search-analyses#129

* Python upgraded to 3.6.6 rather than 3.7.0 due to a pytest incompatibility.
* Pandas upgraded to 0.23 which should respect dictionary order when creating columns.

Former-commit: greenelab/connectivity-search-analyses@9b83422
dhimmel added a commit to hetio/hetmatpy that referenced this pull request Nov 7, 2018
@dhimmel
Upgrade environment.yml on 2018-07-17
eb68ff4 
Merges greenelab/connectivity-search-analyses#129

* Python upgraded to 3.6.6 rather than 3.7.0 due to a pytest incompatibility.
* Pandas upgraded to 0.23 which should respect dictionary order when creating columns.

Former-commit: greenelab/connectivity-search-analyses@9b83422
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@dhimmel @zietzm