ReactomePA: Reactome Pathway Analysis

This package provides functions for pathway analysis based on REACTOME pathway database. It implements enrichment analysis, gene set enrichment analysis and several functions for visualization.

Authors

Guangchuang YU, School of Public Health, The University of Hong Kong http://ygc.name

License

All source code is copyright, under the GPL-2 License. For more information on GPL-2 License see http://www.gnu.org/licenses/gpl-2.0.html

Installation

To install:

• the latest released version: biocLite("ReactomePA")
• the latest development version: devtools::install_github(c("GuangchuangYu/DOSE", "GuangchuangYu/ReactomePA"))

Documentation

To view the vignette of ReactomePA installed in your system, start R and enter:

vignette("ReactomePA", package="ReactomePA")

More documents can be found in http://www.bioconductor.org/packages/DOSE, http://www.bioconductor.org/packages/clusterProfiler and http://guangchuangyu.github.io/tags/reactomepa.

Bugs/Feature requests

• If you have any, let me know. Thx!