clusterProfiler

This package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.

Authors

Guangchuang YU, School of Public Health, The University of Hong Kong http://ygc.name

Citation

Please cite the following article when using clusterProfiler:

Yu G, Wang L, Han Y and He Q. 
clusterProfiler: an R package for comparing biological themes among gene clusters.
OMICS: A Journal of Integrative Biology, 2012, 16(5):284-287. 

URL: http://online.liebertpub.com/doi/abs/10.1089/omi.2011.0118

License

All source code is copyright, under the Artistic-2.0 License. For more information on Artistic-2.0 License see http://opensource.org/licenses/Artistic-2.0

Installation

To install:

• the latest released version: biocLite("clusterProfiler")
• the latest development version: devtools::install_github(c("GuangchuangYu/DOSE", "GuangchuangYu/clusterProfiler"))

Documentation

To view the vignette of clusterProfiler installed in your system, start R and enter:

vignette("clusterProfiler", package="clusterProfiler")

More documents can be found in http://www.bioconductor.org/packages/DOSE, http://www.bioconductor.org/packages/ReactomePA and http://guangchuangyu.github.io/tags/clusterprofiler.

Bugs/Feature requests

• If you have any, let me know. Thx!