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  1. revica revica Public

    Forked from asereewit/revica

    A reference-based viral consensus genome assembly pipeline

    Nextflow 7 1

  2. covid_swift_pipeline covid_swift_pipeline Public

    Forked from michellejlin/covid_swift_pipeline

    Nextflow 4 4

  3. lava lava Public archive

    Forked from michellejlin/lava

    LAVA: Longitudinal Analysis of Viral Alleles

    Python 3 2

  4. longitudinal_sarscov2 longitudinal_sarscov2 Public

    R 1

  5. Tpallidum_WGS_Pipeline Tpallidum_WGS_Pipeline Public

    Nextflow 1

  6. HPIV3-HN-secondary-structure HPIV3-HN-secondary-structure Public

    Forked from vpeddu/HPIV3-HN-secondary-structure

    Characterizing the HPIV 3 HN gene RNA secondary structure

    PostScript

Repositories

Showing 10 of 60 repositories
  • phipseq Public
    greninger-lab/phipseq’s past year of commit activity
    R 0 MIT 0 0 0 Updated Feb 28, 2025
  • rumina Public Forked from epiliper/rumina

    A high-throughput error correction pipeline for NGS data using Unique Molecular Identifiers (UMIs).

    greninger-lab/rumina’s past year of commit activity
    Rust 0 GPL-3.0 1 0 0 Updated Feb 26, 2025
  • MPV_genomics Public
    greninger-lab/MPV_genomics’s past year of commit activity
    HTML 0 0 0 0 Updated Feb 21, 2025
  • revica-strm Public Forked from epiliper/revica-strm

    An accelerated pipeline for reference-based assembly of viral genomes from capture and metagenomic short read sequencing data

    greninger-lab/revica-strm’s past year of commit activity
    Nextflow 0 2 0 0 Updated Feb 21, 2025
  • rsv_neut_paper Public

    Data and analysis used for the manuscript "Clinical validation of an RSV neutralization assay and analysis of cross-sectional sera associated with 2021–2023 RSV outbreaks to investigate the immunity debt hypothesis".

    greninger-lab/rsv_neut_paper’s past year of commit activity
    0 0 0 0 Updated Feb 12, 2025
  • RAVA_Pipeline Public
    greninger-lab/RAVA_Pipeline’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Feb 3, 2025
  • revica Public Forked from asereewit/revica

    A reference-based viral consensus genome assembly pipeline

    greninger-lab/revica’s past year of commit activity
    Nextflow 7 3 1 1 Updated Jan 22, 2025
  • vadr_annotator Public
    greninger-lab/vadr_annotator’s past year of commit activity
    Perl 0 MIT 0 0 0 Updated Dec 19, 2024
  • vadr-models-hpiv Public

    Human parainfluenza virus (HPIV) VADR models

    greninger-lab/vadr-models-hpiv’s past year of commit activity
    JavaScript 0 0 0 0 Updated Dec 10, 2024
  • pneumovirus_misassemblies Public
    greninger-lab/pneumovirus_misassemblies’s past year of commit activity
    0 0 0 0 Updated Nov 26, 2024
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