Skip to content

Issues: griffithlab/regtools

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

36 Open 62 Closed
36 Open 62 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Regtools junction extract: strandness detection malfunction
#197 opened Oct 22, 2024 by santataRU
Issues with Regtools Statistical Analysis Workflow
#190 opened Sep 16, 2024 by mguaita
feat: Allow read filtering based on mapping quality to junctions extract
#189 opened Jul 3, 2024 by yfarjoun
1
Bug: min_intron_length_ accidentally initialized from anchor (not intron) length parameter
#188 opened Jul 1, 2024 by TimD1
1
bug report: junction extract tool should not count overlapping reads as double support for a junction
#187 opened Jun 26, 2024 by yfarjoun
1
Feature request: add per-read anchor requirement to junction extract tool
#186 opened Jun 26, 2024 by yfarjoun
1
Unrecognized strandness argument!
#185 opened May 11, 2024 by hsymoon
1
KeyError: 'score' problem
#184 opened Apr 10, 2024 by CuteGold0407
Feature request
#183 opened Mar 19, 2024 by Mohamed-HAMICI
1
1
Question about single cell regtools junctions extract.
#182 opened Mar 13, 2024 by xiaohe0404
Splice junctions are delayed by one position at the 5' side
#181 opened Dec 7, 2023 by bkffadia
Building error
#180 opened Dec 6, 2023 by aravindpad
2
Test data for regtools cannot be found!
#179 opened Oct 24, 2023 by Eteleeb
Questions about compare_junctions_hist_v2.R
#178 opened Aug 3, 2023 by R-Najjar
3
installation problem
#176 opened May 15, 2023 by smurph50
3
4
Multiple input BAM
#172 opened Jan 25, 2023 by alexcorm
invalid strand values after running junctions extract
#166 opened Aug 16, 2022 by Vishvak2000
1
Junction extract: different junction start/end sites detected using short and long reads
#165 opened Jul 20, 2022 by ErminZ
1
Comments/problems noticed while getting Example workflow to run
#153 opened Oct 13, 2021 by toddajohnson
1
Example workflow mentions variants.sh, but it could not be found
#151 opened Oct 12, 2021 by toddajohnson
3
Junction annotation questions
#149 opened Aug 3, 2021 by yanwang271
2
carry over nucleotide change
#142 opened Apr 29, 2021 by yang-yangfeng
@yang-yangfeng
junctions extract producing blank file (no output)
#139 opened Oct 20, 2020 by andreismol
9
allow user to set splicing window differently based on acceptor/donor end enhancement
#135 opened Jan 23, 2020 by yang-yangfeng
1
Add option to report window (-w) that was used to consider each variant
#124 opened Oct 30, 2019 by kcotto
ProTip! Adding no:label will show everything without a label.