pin to SciPy>=1.8 to ensure performance of KDTree

grlee77 · Apr 27, 2024 · 2c6a1cb · 2c6a1cb
1 parent 5427e35
commit 2c6a1cb
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diff --git a/conda/environments/all_cuda-118_arch-x86_64.yaml b/conda/environments/all_cuda-118_arch-x86_64.yaml
@@ -44,7 +44,7 @@ dependencies:
 - pywavelets>=1.0
 - recommonmark
 - scikit-image>=0.19.0,<0.23.0a0
-- scipy
+- scipy>=1.8.0
 - sphinx<6
 - sysroot_linux-64==2.17
 - tifffile>=2022.7.28

diff --git a/conda/environments/all_cuda-122_arch-x86_64.yaml b/conda/environments/all_cuda-122_arch-x86_64.yaml
@@ -43,7 +43,7 @@ dependencies:
 - pywavelets>=1.0
 - recommonmark
 - scikit-image>=0.19.0,<0.23.0a0
-- scipy
+- scipy>=1.8.0
 - sphinx<6
 - sysroot_linux-64==2.17
 - tifffile>=2022.7.28

diff --git a/dependencies.yaml b/dependencies.yaml
@@ -248,7 +248,7 @@ dependencies:
           - lazy_loader>=0.1
           - numpy>=1.23.4,<2.0a0
           - scikit-image>=0.19.0,<0.23.0a0
-          - scipy
+          - scipy>=1.8.0
       - output_types: conda
         packages:
           - cupy>=12.0.0

diff --git a/python/cucim/pyproject.toml b/python/cucim/pyproject.toml
@@ -29,7 +29,7 @@ dependencies = [
     "lazy_loader>=0.1",
     "numpy>=1.23.4,<2.0a0",
     "scikit-image>=0.19.0,<0.23.0a0",
-    "scipy",
+    "scipy>=1.8.0",
 ] # This list was generated by `rapids-dependency-file-generator`. To make changes, edit ../../dependencies.yaml and run `rapids-dependency-file-generator`.
 classifiers = [
     "Development Status :: 4 - Beta",