Analysis code for "Drivers and Determinants of Strain Dynamics Following Fecal Microbiota Transplantation" by Schmidt, Li et al
To run or recapitulate the above code, please download the underlying datasets in Rdata format from Zenodo:
'Raw' Metagenome-Assembled Genomes generated as part of the study are also available via Zenodo:
The study is available as a preprint:
https://www.biorxiv.org/content/10.1101/2021.09.30.462010v1
For questions please contact sebastian.schmidt@embl.de