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New GTDB database release #40

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pavlohrab opened this issue Dec 15, 2023 · 2 comments
Open

New GTDB database release #40

pavlohrab opened this issue Dec 15, 2023 · 2 comments

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@pavlohrab
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Hello,

I see the statistics on GTDB, the amount of genomes doubled in the database since release 95, which is used in gunc. Is there a plan to update the GTDB database?

Best,
Pavlo
@pavlohrab
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Is it also possible to update Progenomes database to progenomes 3? Is there an ETA? Or, for example, is there a way user can do that on their own?

@quliping quliping mentioned this issue Feb 26, 2024
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@chrisgulvik
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chrisgulvik commented Sep 17, 2024 •
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  • GTDB v214 is available here
  • Progenomes 3 is available here
wget https://swifter.embl.de/~fullam/gunc/gunc_db_gtdb214.dmnd.gz
wget https://swifter.embl.de/~fullam/gunc/gunc_db_progenomes3.dmnd.gz

edit: this could be closed

@chrisgulvik chrisgulvik mentioned this issue Sep 17, 2024
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@chrisgulvik @pavlohrab