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Consistency across multi-omics layers in a drug-perturbed gut microbial community

Sander Wuyts, Renato Alves, Maria Zimmermann-Kogadeeva, Suguru Nishijima, Sonja Blasche, Marja Driessen, Philipp E. Geyer, Rajna Hercog, Ece Kartal, Lisa Maier, Johannes B. Müller, Sarela Garcia Santamarina, Thomas Sebastian B. Schmidt, Daniel C. Sevin, Anja Telzerow, Peter V. Treit, Tobias Wenzel, Athanasios Typas, Kiran R. Patil, Matthias Mann, Michael Kuhn, Peer Bork,

Figures and supplementary results

Figures were generated with a mix of Python and R. For Python, a virtual env will be created, which is going to be set up when you run make. For R, pacman is used to install missing packages into a local directory.

Data is stored on Figshare, and will be downloaded automatically. (Download size: approx. 330 MB)

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