bug fixes to adress #303

gtonkinhill · Sep 20, 2024 · 1662aed · 1662aed
1 parent e928a7a
commit 1662aed
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Showing 2 changed files with 5 additions and 2 deletions.
diff --git a/panaroo/cdhit.py b/panaroo/cdhit.py
@@ -190,7 +190,7 @@ def cluster_nodes_cdhit(
  s=s,
  aL=aL,
  AL=AL,
- aS=AS,
+ aS=aS,
  accurate=accurate,
  use_local=use_local,
  strand=strand,
@@ -203,7 +203,7 @@ def cluster_nodes_cdhit(
  s=s,
  aL=aL,
  AL=AL,
- aS=AS,
+ aS=aS,
  accurate=accurate,
  use_local=use_local,
  quiet=quiet,

diff --git a/panaroo/generate_network.py b/panaroo/generate_network.py
@@ -225,4 +225,7 @@ def generate_network(cluster_file, data_file, prot_seq_file, all_dna=False):
  members=intbitset([genome_id]))
  prev = current_cluster
 
+ if prev is not None: 
+ G.nodes[prev]['hasEnd'] = True
+
  return G, centroid_context, seqid_to_centroid