MKGCN: a novel method for microbe-drug associations prediction via multiple kernel fusion on graph neural network.
1)MDAD: including 2470 clinically or experimentally verified microbe-drug associations, between 1373 drugs and 173 microbes;
2)aBiofilm: including resource of anti-biofilm agents and their potential implications in antibiotic drug resistance;
3)DrugVirust: including the activity and development of related compounds of a variety of human viruses;
- adj: interaction pairs between microbes and drugs.
- drugs: IDs and names for drugs.
- microbes/viruses: IDs and names for microbes/viruses.
- drugfeatures: pre-processing feature matrix for drugs.
- microbefeatures: pre-processing feature matrix for microbes.
- drugsimilarity: integrated drug similarity matrix.
- microbesimilarity: integrated microbe similarity matrix.
- Python 3.7
- Pytorch
- PyTorch Geometric
- numpy
- scipy