Use HFile instead of h5py.File in most places #4792
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Note that I haven't touched |
GarethCabournDavies
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I have also avoided live (due to efficiency worries) and inference, so as not to interfere with the h5py.File wrapper used there |
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ahnitz
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Jul 4, 2024
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* Move to HFile in pycbc_add_statmap * Move to HFile in pycbc_apply_rerank * update all-sky psd code * Move pycbc_coinc_(findtrigs,hdfinjfine,mergetrigs) to HFile * More places with HFile * More moves * Use HFile in more places * Use HFile in more places * Use HFile in more places * Use HFile in more places * Use HFile in more places * Use HFile rather than h5py.File in bank * move live executables to use HFile * Use HFile in live examples * Move minifollowups to use HFile * Move populations to use HFile * Move banksim codes to use HFile * Start to move plotting codes to use HFile * Finish moving plotting codes to use HFile * Move scripts in /bin/ to use HFile * Move bin/workflow_comparisons/offline_search codes to use HFile * Use HFile in pycbc/events * Moving more parts of pycbc/ to use HFile * Use HFile for other things in pycbc/io/hdf * Use HFile in pygrb codes * Revert "Use HFile in pycbc/events" This reverts commit 99dce9d. * Missed removal of imports * Remove HFile from types/array * Remove HFile from pycbc/types
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* Move to HFile in pycbc_add_statmap * Move to HFile in pycbc_apply_rerank * update all-sky psd code * Move pycbc_coinc_(findtrigs,hdfinjfine,mergetrigs) to HFile * More places with HFile * More moves * Use HFile in more places * Use HFile in more places * Use HFile in more places * Use HFile in more places * Use HFile in more places * Use HFile rather than h5py.File in bank * move live executables to use HFile * Use HFile in live examples * Move minifollowups to use HFile * Move populations to use HFile * Move banksim codes to use HFile * Start to move plotting codes to use HFile * Finish moving plotting codes to use HFile * Move scripts in /bin/ to use HFile * Move bin/workflow_comparisons/offline_search codes to use HFile * Use HFile in pycbc/events * Moving more parts of pycbc/ to use HFile * Use HFile for other things in pycbc/io/hdf * Use HFile in pygrb codes * Revert "Use HFile in pycbc/events" This reverts commit 99dce9d. * Missed removal of imports * Remove HFile from types/array * Remove HFile from pycbc/types
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Use pycbc.io.hdf's HFile class rather than h5py.File directly so that we can make changes to the functionality.
For example checksumming, version information, and anything else we may want
Standard information about the request
This is a change to utilise potential future features
This change touches everywhere in the code, but affects nothing
This change follows style guidelines (See e.g. PEP8), has been proposed using the contribution guidelines
Contents
Not quite find-and-replace, but update everywhere which uses h5py.File to pycbc.io.HFile
Links to any issues or associated PRs
#1525 #4768
Testing
Broadly, this should be checked by the CI running
--helpfor all executables