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When I try to install GangSTR, I always encounter this problem repeatedly during the ‘make’ step #127

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beixuancheng opened this issue Aug 11, 2024 · 1 comment

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@beixuancheng
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When I try to install, I always encounter this problem repeatedly during the ‘make’ step,

configure.ac: error: required file 'config.guess' not found
configure.ac:   try running autoreconf --install
make[2]: *** [CMakeFiles/htslib.dir/build.make:124: thirdparty/htslib/src/htslib-stamp/htslib-update] Error 1
make[1]: *** [CMakeFiles/Makefile2:160: CMakeFiles/htslib.dir/all] Error 2
make: *** [Makefile:166: all] Error 2

but I have no problem installing the necessary dependencies for htslib, and the CMakeLists.txt file also exists. What are the reasons for this? If possible, please speak in detail. I know very little about these things, and I would be very grateful

/usr/bin/cmake -S/root/GangSTR -B/root/GangSTR/build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /root/GangSTR/build/CMakeFiles /root/GangSTR/build//CMakeFiles/progress.marks
make  -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/root/GangSTR/build'
make  -f CMakeFiles/pnlopt.dir/build.make CMakeFiles/pnlopt.dir/depend
make[2]: Entering directory '/root/GangSTR/build'
cd /root/GangSTR/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /root/GangSTR /root/GangSTR /root/GangSTR/build /root/GangSTR/build /root/GangSTR/build/CMakeFiles/pnlopt.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/root/GangSTR/build'
make  -f CMakeFiles/pnlopt.dir/build.make CMakeFiles/pnlopt.dir/build
make[2]: Entering directory '/root/GangSTR/build'
make[2]: Nothing to be done for 'CMakeFiles/pnlopt.dir/build'.
make[2]: Leaving directory '/root/GangSTR/build'
[ 13%] Built target pnlopt
make  -f CMakeFiles/zlib.dir/build.make CMakeFiles/zlib.dir/depend
make[2]: Entering directory '/root/GangSTR/build'
cd /root/GangSTR/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /root/GangSTR /root/GangSTR /root/GangSTR/build /root/GangSTR/build /root/GangSTR/build/CMakeFiles/zlib.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/root/GangSTR/build'
make  -f CMakeFiles/zlib.dir/build.make CMakeFiles/zlib.dir/build
make[2]: Entering directory '/root/GangSTR/build'
make[2]: Nothing to be done for 'CMakeFiles/zlib.dir/build'.
make[2]: Leaving directory '/root/GangSTR/build'
[ 26%] Built target zlib
make  -f CMakeFiles/htslib.dir/build.make CMakeFiles/htslib.dir/depend
make[2]: Entering directory '/root/GangSTR/build'
cd /root/GangSTR/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /root/GangSTR /root/GangSTR /root/GangSTR/build /root/GangSTR/build /root/GangSTR/build/CMakeFiles/htslib.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/root/GangSTR/build'
make  -f CMakeFiles/htslib.dir/build.make CMakeFiles/htslib.dir/build
make[2]: Entering directory '/root/GangSTR/build'
[ 27%] Performing update step for 'htslib'
cd /root/GangSTR/build/thirdparty/htslib/src/htslib && autoreconf /root/GangSTR/build/thirdparty/htslib/src/htslib
configure.ac: error: required file 'config.sub' not found
configure.ac: error: required file 'config.guess' not found
configure.ac:   try running autoreconf --install
make[2]: *** [CMakeFiles/htslib.dir/build.make:124: thirdparty/htslib/src/htslib-stamp/htslib-update] Error 1
make[2]: Leaving directory '/root/GangSTR/build'
make[1]: *** [CMakeFiles/Makefile2:160: CMakeFiles/htslib.dir/all] Error 2
make[1]: Leaving directory '/root/GangSTR/build'
make: *** [Makefile:166: all] Error 2
@Gedofs
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Gedofs commented Dec 9, 2024

were you able to solve it?

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