NER Benchmark Script #148
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NER Benchmark Script #148
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…ching reference annotations, counter for most common false positives in bioid_ner_benchmark.py. Implemented a condition in the NER component to match only 2+ letter entities in ner.py.
…th top matches and all matches.
galileosteinberg
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bgyori
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Jul 25, 2024
bgyori
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Jul 25, 2024
bgyori
reviewed
Jul 25, 2024
bgyori
reviewed
Jul 25, 2024
bgyori
reviewed
Jul 25, 2024
bgyori
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Jul 25, 2024
bgyori
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Jul 25, 2024
bgyori
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Completed NER benchmark script. Added progress bars to show progress. I also added a small feature in ner.py for the annotate method to ignore raw_spans <= 1 (as we have previously discussed) so that Gilda does not annotate single character text spans.