Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Split disambiguation evaluation #93

Merged
merged 4 commits into from
Apr 26, 2022

Conversation

cthoyt
Copy link
Member

@cthoyt cthoyt commented Apr 26, 2022

This PR makes it possible to turn off context-based disambiguation but keep species-based disambiguation. It also adds a little extra documentation to the output to remind what gilda and bio-ontology version were used, so you can run

$ python bioid_evaluation.py
$ python bioid_evaluation.py --no-model-disambiguation

and get the two different outputs

Potential TODOs

  • generalize the diff script to make a diff table in the results

@bgyori bgyori force-pushed the split-disambiguation-evaluation branch from b502000 to fecf6db Compare April 26, 2022 19:20
@bgyori bgyori merged commit 6255ec0 into gyorilab:master Apr 26, 2022
@cthoyt cthoyt deleted the split-disambiguation-evaluation branch April 26, 2022 20:58
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants