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Purpose of h3aGWAS
Scott Hazelhurst edited this page Dec 30, 2016
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The witsGWAS pipelines enable automation of routine GWAS tasks e.g. QC and association testing, allowing for the efficient analysis of multiple GWAS datasets in a timely manner.
About h3aGWAS
Getting started
Running pipelines
- Quick Start
- The nextflow config file
- Pipeline options
- The Pipelines
- Affy Calling
- Converting from Illumina Top-Bottom
- PLINK QC pipeline
- Association testing pipeline
- Post-GWAS analysis
Extending pipelines
Getting help