Merge pull request #1146 from haddocking/amjjbonvin-patch-1

Update README.md

README.md

@@ -23,30 +23,21 @@ HADDOCK, standing for **H**igh **A**mbiguity **D**riven protein-protein **DOCK**
 
 ## Installation
 
+Simple installation of the [latest release](https://pypi.org/project/haddock3/) of HADDOCK3. 
+
 ```bash
 pip install haddock3
 ```
 
-Execute:
+In case you rather install the latest unreleased version use instead:
 
 ```bash
-$ haddock3 -h
-usage: haddock3 [-h] [--restart RESTART] [--extend-run EXTEND_RUN] [--setup] [--log-level {DEBUG,INFO,WARNING,ERROR,CRITICAL}] [-v] recipe
-
-positional arguments:
-  recipe                The input recipe file path
-
-optional arguments:
-  -h, --help            show this help message and exit
-  --restart RESTART     Restart the run from a given step. Previous folders from the selected step onwards will be deleted.
-  --extend-run EXTEND_RUN
-                        Start a run from a run directory previously prepared with the `haddock3-copy` CLI. Provide the run directory created with `haddock3-copy` CLI.
-  --setup               Only setup the run, do not execute
-  --log-level {DEBUG,INFO,WARNING,ERROR,CRITICAL}
-  -v, --version         show version
+git clone https://github.com/haddocking/haddock3.git
+cd haddock3
+pip install .
 ```
 
-For the installation of third-party additional software, please check the [INSTALL](docs/INSTALL.md).
+For detailed instructions and installation of third-party software, please check [INSTALL.md](docs/INSTALL.md) 
 
 You might also want to check the following utilities:
 
@@ -62,6 +53,25 @@ The most basic usage is:
 haddock3 <configuration-file.toml>
 ```
 
+For help on haddock3 usage:
+
+```bash
+$ haddock3 -h
+usage: haddock3 [-h] [--restart RESTART] [--extend-run EXTEND_RUN] [--setup] [--log-level {DEBUG,INFO,WARNING,ERROR,CRITICAL}] [-v] recipe
+
+positional arguments:
+  recipe                The input recipe file path
+
+optional arguments:
+  -h, --help            show this help message and exit
+  --restart RESTART     Restart the run from a given step. Previous folders from the selected step onwards will be deleted.
+  --extend-run EXTEND_RUN
+                        Start a run from a run directory previously prepared with the `haddock3-copy` CLI. Provide the run directory created with `haddock3-copy` CLI.
+  --setup               Only setup the run, do not execute
+  --log-level {DEBUG,INFO,WARNING,ERROR,CRITICAL}
+  -v, --version         show version
+```
+
 Check the [EXAMPLES](https://github.com/haddocking/haddock3/blob/main/examples/README.md) page for more some usage examples and the [MANUAL]() (_coming soon!_) for a more detailed explanation of the configuration file.
 
 ## Support