add deprecation notice

src/haddock/clis/cli_restraints.py

@@ -17,59 +17,83 @@
 
     haddock3-restraints <TASK_NAME> -h
 """
+
 import argparse
 import sys
 
-from haddock.clis.restraints.restrain_bodies import add_restrain_bodies_arguments, restrain_bodies
-from haddock.clis.restraints.passive_from_active import add_pass_from_act_arguments, passive_from_active
-from haddock.clis.restraints.validate_tbl import add_validate_tbl_arguments, validate_tbl
-from haddock.clis.restraints.active_passive_to_ambig import add_actpass_to_ambig_arguments, actpass_to_ambig
-from haddock.clis.restraints.calc_accessibility import add_calc_accessibility_arguments, calc_accessibility
+from haddock import log
+from haddock.clis.restraints.active_passive_to_ambig import (
+    actpass_to_ambig,
+    add_actpass_to_ambig_arguments,
+    )
+from haddock.clis.restraints.calc_accessibility import (
+    add_calc_accessibility_arguments,
+    calc_accessibility,
+    )
+from haddock.clis.restraints.passive_from_active import (
+    add_pass_from_act_arguments,
+    passive_from_active,
+    )
+from haddock.clis.restraints.restrain_bodies import (
+    add_restrain_bodies_arguments,
+    restrain_bodies,
+    )
+from haddock.clis.restraints.validate_tbl import (
+    add_validate_tbl_arguments,
+    validate_tbl,
+    )
 from haddock.clis.restraints.z_surface_restraints import (
     add_z_surf_restraints_arguments,
     gen_z_surface_restraints,
     )
 
+
 # Command line interface parser
 ap = argparse.ArgumentParser(
     prog="haddock3-restraints",
     description=__doc__,
     formatter_class=argparse.RawDescriptionHelpFormatter,
-    )
+)
 
-subparsers = ap.add_subparsers(title='subcommands',
-                               description='valid subcommands',
-                               help='additional help')
+subparsers = ap.add_subparsers(
+    title="subcommands", description="valid subcommands", help="additional help"
+)
 
 # restrain_bodies subcommand
-restrain_bodies_subcommand = subparsers.add_parser('restrain_bodies')
+restrain_bodies_subcommand = subparsers.add_parser("restrain_bodies")
 restrain_bodies_subcommand.set_defaults(func=restrain_bodies)
 restrain_bodies_subcommand = add_restrain_bodies_arguments(restrain_bodies_subcommand)
 
 # passive_from_active subcommand
-pass_from_act_subcommand = subparsers.add_parser('passive_from_active')
+pass_from_act_subcommand = subparsers.add_parser("passive_from_active")
 pass_from_act_subcommand.set_defaults(func=passive_from_active)
 pass_from_act_subcommand = add_pass_from_act_arguments(pass_from_act_subcommand)
 
 # validate_tbl subcommand
-validate_tbl_subcommand = subparsers.add_parser('validate_tbl')
+validate_tbl_subcommand = subparsers.add_parser("validate_tbl")
 validate_tbl_subcommand.set_defaults(func=validate_tbl)
 validate_tbl_subcommand = add_validate_tbl_arguments(validate_tbl_subcommand)
 
 # active_passive_to_ambig subcommand
-actpass_to_ambig_subcommand = subparsers.add_parser('active_passive_to_ambig')
+actpass_to_ambig_subcommand = subparsers.add_parser("active_passive_to_ambig")
 actpass_to_ambig_subcommand.set_defaults(func=actpass_to_ambig)
-actpass_to_ambig_subcommand = add_actpass_to_ambig_arguments(actpass_to_ambig_subcommand)
+actpass_to_ambig_subcommand = add_actpass_to_ambig_arguments(
+    actpass_to_ambig_subcommand
+)
 
 # calc_accessibility subcommand
-calc_accessibility_subcommand = subparsers.add_parser('calc_accessibility')
+calc_accessibility_subcommand = subparsers.add_parser("calc_accessibility")
 calc_accessibility_subcommand.set_defaults(func=calc_accessibility)
-calc_accessibility_subcommand = add_calc_accessibility_arguments(calc_accessibility_subcommand)
+calc_accessibility_subcommand = add_calc_accessibility_arguments(
+    calc_accessibility_subcommand
+)
 
 # z_surface_restraints subcommand
-z_surface_restraints_subcommand = subparsers.add_parser('z_surface_restraints')
+z_surface_restraints_subcommand = subparsers.add_parser("z_surface_restraints")
 z_surface_restraints_subcommand.set_defaults(func=gen_z_surface_restraints)
-z_surface_restraints_subcommand = add_z_surf_restraints_arguments(z_surface_restraints_subcommand)
+z_surface_restraints_subcommand = add_z_surf_restraints_arguments(
+    z_surface_restraints_subcommand
+)
 
 
 def _ap():
@@ -83,6 +107,9 @@ def load_args(ap):
 
 def maincli():
     """Execute main client."""
+    log.info(
+        "[DEPRECATION NOTICE] This command will soon be replaced with `haddock-restraints`"
+    )
     args = ap.parse_args()
     cmd = vars(load_args(ap))
     cmd.pop("func")