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@hall-lab

Ira Hall lab

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  1. cluster_intro cluster_intro Public

    Hall Lab Computing 101

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Repositories

Showing 10 of 34 repositories
  • bamkit Public

    Tools for common BAM file manipulations

    hall-lab/bamkit’s past year of commit activity
    Python 2 MIT 6 2 1 Updated Apr 4, 2024
  • competitive-alignment Public
    hall-lab/competitive-alignment’s past year of commit activity
    Shell 10 2 0 0 Updated Jun 8, 2023
  • cromulent Public
    hall-lab/cromulent’s past year of commit activity
    Python 0 MIT 0 0 1 Updated May 22, 2023
  • speedseq Public

    A flexible framework for rapid genome analysis and interpretation

    hall-lab/speedseq’s past year of commit activity
    C 314 MIT 117 70 5 Updated Oct 18, 2022
  • assembly_validation Public
    hall-lab/assembly_validation’s past year of commit activity
    Python 5 MIT 1 0 0 Updated Jun 10, 2022
  • svtools Public

    Tools for processing and analyzing structural variants.

    hall-lab/svtools’s past year of commit activity
    Python 149 MIT 54 66 4 Updated May 2, 2022
  • cromwell-deployment Public

    Scripts and configuration to setup a Cromwell deployment

    hall-lab/cromwell-deployment’s past year of commit activity
    Python 2 ISC 3 4 0 Updated Dec 14, 2021
  • sv-pipeline Public

    Pipeline for structural variation detection in cohorts

    hall-lab/sv-pipeline’s past year of commit activity
    WDL 48 20 11 0 Updated Sep 14, 2021
  • lah Public

    Local Assembly of Haplotypes

    hall-lab/lah’s past year of commit activity
    Python 0 MIT 1 0 1 Updated Mar 25, 2021
  • cloud-polices Public
    hall-lab/cloud-polices’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Mar 25, 2021
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