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make :can not find -lCore -lRIO -lHist -lGraf -lGpad -lTree -lMathCore #153

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klelizi opened this issue Dec 8, 2022 · 0 comments
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@klelizi
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klelizi commented Dec 8, 2022

make[2]: Entering directory '/root/speed/speedseq/src/CNVnator'
Compiling with parallel (OpenMP) support
g++ -O3 -std=c++11 -DCNVNATOR_VERSION="v0.3.3" -fopenmp -o cnvnator obj/cnvnator.o obj/EXOnator.o obj/HisMak.o obj/AliParser.o obj/Genotyper.o obj/Interval.o obj/Genome.o samtools/libbam.a samtools/htslib-1.3.1/libhts.-lz -L/usr/local/root/lib -lCore -lRIO -lHist -lGraf -lGpad -lTree -lMathCore
/usr/bin/ld: skipping incompatible /usr/local/root/lib/libCore.so when searching for -lCore
/usr/bin/ld: cannot find -lCore
/usr/bin/ld: skipping incompatible /usr/local/root/lib/libRIO.so when searching for -lRIO
/usr/bin/ld: cannot find -lRIO
/usr/bin/ld: skipping incompatible /usr/local/root/lib/libHist.so when searching for -lHist
/usr/bin/ld: cannot find -lHist
/usr/bin/ld: skipping incompatible /usr/local/root/lib/libGraf.so when searching for -lGraf
/usr/bin/ld: cannot find -lGraf
/usr/bin/ld: skipping incompatible /usr/local/root/lib/libGpad.so when searching for -lGpad
/usr/bin/ld: cannot find -lGpad
/usr/bin/ld: skipping incompatible /usr/local/root/lib/libTree.so when searching for -lTree
/usr/bin/ld: cannot find -lTree
/usr/bin/ld: skipping incompatible /usr/local/root/lib/libMathCore.so when searching for -lMathCore
/usr/bin/ld: cannot find -lMathCore
collect2: error: ld returned 1 exit status
make[2]: *** [Makefile:59: cnvnator] Error 1
make[2]: Leaving directory '/root/speed/speedseq/src/CNVnator'
make[1]: *** [Makefile:139: cnvnator] Error 2
make[1]: Leaving directory '/root/speed/speedseq'
make: *** [Makefile:31: all] Error 2
[root@host-10-208-28-170 speedseq]#

What should i do to solve it?Thanks very much.

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