This project provides a family of libraries to construct “Ketrew Workflows” for bioinformatics pipelines.
This should be considered “alpha / preview” software.
See the documentation at
www.hammerlab.org/docs/biokepi/master
.
The main dependency is Ketrew (which requires OCaml ≥ 4.02.2).
To install the pre-release through opam
:
opam pin add biokepi "https://github.com/hammerlab/biokepi.git#biokepi.0.0.0"
[opam install biokepi]
To use the master
branch you need also to track the master
branch of Ketrew:
opam pin add ketrew https://github.com/hammerlab/ketrew.git
opam pin add biokepi https://github.com/hammerlab/biokepi.git
To build locally:
make
make clean ; WITH_TESTS=true make # To build also all the tests
make doc # To build the documentation, then cf. _build/doc/index.html
The Biokepi
module is the main entry point for most use cases.
There are “demo” command-line applications in the src/app/
directory and
tests in src/test/
.
The main demo application (src/app/main.ml
) is documented here: Use the
demo.