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Normalised stats (#396) #89

Normalised stats (#396)

Normalised stats (#396) #89

Workflow file for this run

name: Build and push to PyPI on merging to master
on:
push:
branches:
- master
jobs:
get-version:
runs-on: ubuntu-latest
outputs:
version: ${{ steps.step1.outputs.v }}
steps:
- uses: actions/checkout@v4
- name: Get version number
id: step1
run: echo "v=$(grep ':Version:' README.rst | awk '{print $2}')" >> $GITHUB_OUTPUT
git-tag-and-release:
runs-on: ubuntu-latest
needs: get-version
steps:
- uses: actions/checkout@v4
- name: set version number
run: echo "DIST_VERSION=v${{ needs.get-version.outputs.version }}" >> $GITHUB_ENV
- name: Create Tag
uses: actions/github-script@v6
with:
script: |
const {DIST_VERSION} = process.env
github.rest.git.createRef({
owner: context.repo.owner,
repo: context.repo.repo,
ref: `refs/tags/${DIST_VERSION}`,
sha: context.sha
})
- name: Create GitHub Release
uses: ncipollo/release-action@v1
with:
name: "${{ env.DIST_VERSION }}"
tag: "${{ env.DIST_VERSION }}"
generateReleaseNotes: true
token: ${{ secrets.GITHUB_TOKEN }}
pypi-release:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up Python 3.11
uses: actions/setup-python@v5
with:
python-version: 3.11
- name: Install pypa/build
run: python -m pip install build --user
- name: Build a binary wheel and a source tarball
run: python -m build --sdist --wheel --outdir dist/
- name: Publish to PyPI
uses: pypa/gh-action-pypi-publish@release/v1
with:
password: ${{ secrets.PYPI_API_TOKEN }}
pypi-public:
needs:
- get-version
- pypi-release
runs-on: ubuntu-latest
steps:
- name: Wait for PyPi
uses: nev7n/wait_for_response@v1
with:
url: "https://files.pythonhosted.org/packages/source/a/anesthetic/anesthetic-${{ needs.get-version.outputs.version }}.tar.gz"
responseCode: 200
timeout: 600000
interval: 10000
aur-release:
needs: pypi-public
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up Python 3.11
uses: actions/setup-python@v5
with:
python-version: 3.11
- name: Install dependencies
run: |
python -m pip install --upgrade pip
python -m pip install tomli
- name: Generate PKGBUILD
run: python ./bin/gen_PKGBUILD.py > ./PKGBUILD
- name: Publish AUR package
uses: KSXGitHub/github-actions-deploy-aur@v2.7.0
with:
pkgname: python-anesthetic
pkgbuild: ./PKGBUILD
updpkgsums: True
commit_username: ${{ secrets.AUR_USERNAME }}
commit_email: ${{ secrets.AUR_EMAIL }}
ssh_private_key: ${{ secrets.AUR_SSH_PRIVATE_KEY }}
conda-release:
needs: pypi-public
name: Build and deploy to conda
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Conda environment creation and activation
uses: conda-incubator/setup-miniconda@v2
with:
python-version: 3.11
auto-update-conda: false
auto-activate-base: false
show-channel-urls: true
- name: install dependencies
shell: bash -el {0}
run: conda install grayskull conda-build anaconda-client
- name: Generate meta.yaml from grayskull
shell: bash -el {0}
run: grayskull pypi --strict-conda-forge anesthetic
- name: Build and upload the conda packages
uses: uibcdf/action-build-and-upload-conda-packages@v1.2.0
with:
meta_yaml_dir: anesthetic
python-version: 3.11
user: handley-lab
label: 'main'
token: ${{ secrets.ANACONDA_TOKEN }} # Replace with the right name of your secret
conda-build:
needs:
- conda-release
- get-version
name: test installation from conda
runs-on: ubuntu-latest
steps:
- name: Conda environment creation and activation
uses: conda-incubator/setup-miniconda@v2
with:
python-version: 3.11
auto-update-conda: false
auto-activate-base: false
show-channel-urls: true
- name: install from conda
shell: bash -el {0}
run: conda install -c handley-lab anesthetic
- name: get install version
shell: bash -el {0}
run: echo "install_version=$(python -c 'import anesthetic; print(anesthetic.__version__)')" >> $GITHUB_ENV
- name: fail if versions not matching
if: ${{ env.install_version != needs.get-version.outputs.version }}
run: exit 1
pypi-build:
needs:
- pypi-public
- get-version
name: test installation from pypi
runs-on: ubuntu-latest
steps:
- name: Set up Python 3.11
uses: actions/setup-python@v4
with:
python-version: 3.11
- name: Install from pypi
run: pip install anesthetic
- name: get install version
run: echo "install_version=$(python -c 'import anesthetic; print(anesthetic.__version__)')" >> $GITHUB_ENV
- name: fail if versions not matching
if: ${{ env.install_version != needs.get-version.outputs.version }}
run: exit 1