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CI #1524

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CI

CI #1524

Workflow file for this run

.github/workflows/CI.yaml at 42b1ead
name: CI
on:
push:
branches: [master]
pull_request:
branches: [master]
schedule:
- cron: "0 0 * * *"
jobs:
lint:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
- name: Upgrade pip and install linters
run: |
python -m pip install --upgrade pip
python -m pip install flake8 pydocstyle packaging
- name: flake8 PEP compliance checks
run: python -m flake8 anesthetic tests
- name: pydocstyle documentation style checks
run: python -m pydocstyle --convention=numpy anesthetic
- name: Count missing test fixtures
run: |
if [ $( grep -L 'close_figures_on_teardown'
$(grep -l 'matplotlib' tests/test*.py) | wc -w ) -ne 0]
then
missing_tests=$( grep -L 'close_figures_on_teardown'
$(grep -l 'matplotlib' tests/test*.py) )
echo "$missing_tests are missing the
close_figures_on_teardown fixture."
exit 1
fi
sphinx:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- uses: actions/setup-python@v2
with:
python-version: '3.11'
- name: Upgrade pip and install doc requirements
run: |
python -m pip install --upgrade pip
python -m pip install numpy~=1.0
python -m pip install -e ".[all,docs]"
- name: build documentation
run: |
cd docs
make clean
make html SPHINXOPTS="-W --keep-going -n"
pip:
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [ubuntu-latest]
python-version: ['3.9', '3.10', '3.11']
extras: [true, false]
include:
- os: macos-latest
python-version: '3.11'
extras: true
- os: windows-latest
python-version: '3.11'
extras: true
steps:
- uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Install hdf5 for macOS
if: ${{ matrix.os == 'macos-latest' }}
run: brew install hdf5 c-blosc
- name: Install dependencies
run: |
python -m pip install --upgrade pip
python -m pip install -e ".[test]"
- name: Install extra dependencies
if: ${{ matrix.extras }}
run: |
python -m pip install -e ".[all]"
- name: Test with pytest
run: python -m pytest --cov=anesthetic tests
- name: Upload coverage to Codecov
uses: codecov/codecov-action@v4
with:
token: ${{ secrets.CODECOV_TOKEN }}
conda:
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [ubuntu-latest]
python-version: ['3.9', '3.10', '3.11']
include:
- os: macos-latest
python-version: '3.11'
- os: windows-latest
python-version: '3.11'
steps:
- uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: conda-incubator/setup-miniconda@v3
with:
python-version: ${{ matrix.python-version }}
- name: Install hdf5 for macOS
if: ${{ matrix.os == 'macos-latest' }}
run: brew install hdf5 c-blosc
- name: Install dependencies
shell: bash -l {0}
run: |
conda config --append channels conda-forge
conda install pytest pytest-cov
conda install scipy numpy 'matplotlib>=3.6.1,<3.9.0' 'pandas~=2.2.0'
- name: Test with pytest
shell: bash -l {0}
run: python -m pytest --cov=anesthetic tests
- name: Upload coverage to Codecov
uses: codecov/codecov-action@v4
with:
token: ${{ secrets.CODECOV_TOKEN }}
test-build-n-publish:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up Python 3.11
uses: actions/setup-python@v5
with:
python-version: 3.11
- name: Install pypa/build
run: python -m pip install build --user
- name: Build a binary wheel and a source tarball
run: python -m build --sdist --wheel --outdir dist/
- name: Publish to Test PyPI
uses: pypa/gh-action-pypi-publish@release/v1
continue-on-error: true
with:
password: ${{ secrets.TEST_PYPI_API_TOKEN }}
repository_url: https://test.pypi.org/legacy/
skip_existing: true
minimum-dependencies:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up Python 3.9
uses: actions/setup-python@v5
with:
python-version: 3.9
- name: Upgrade pip and install tomli
run: |
python -m pip install --upgrade pip
python -m pip install tomli
- name: Install minimum dependencies
run: eval "python -m pip install $(./bin/min_dependencies.py)"
- name: Install anesthetic
run: python -m pip install -e ".[test]"
- name: Test with pytest
run: python -m pytest --cov=anesthetic tests
- name: Upload coverage to Codecov
uses: codecov/codecov-action@v4
with:
token: ${{ secrets.CODECOV_TOKEN }}
latest-dependencies:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up latest stable Python 3
uses: actions/setup-python@v5
with:
python-version: 3.x
- name: Upgrade pip and install tomli
run: |
python -m pip install --upgrade pip
python -m pip install tomli
- name: Install latest dependencies
run: eval "python -m pip install $(./bin/latest_dependencies.py)"
- name: Install pytest and anesthetic
run: |
python -m pip install pytest
python -m pip install --no-deps -e .
- name: Test with pytest
run: python -m pytest tests
check-for-new-versions:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up latest stable Python 3
uses: actions/setup-python@v5
with:
python-version: 3.x
- name: Upgrade pip and install tomli and requests
run: |
python -m pip install --upgrade pip
python -m pip install tomli requests
- name: Install anesthetic
run: python -m pip install -e ".[test]"
- name: Check anesthetic dependencies are up to date
run: python -m pytest ./bin/check_up_to_date.py