Perfect Nested Sampling: Gaussian Likelihood and Gaussian Priors #1116
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name: CI | |
on: | |
push: | |
branches: [master] | |
pull_request: | |
branches: [master] | |
schedule: | |
- cron: "0 0 * * *" | |
jobs: | |
lint: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: actions/setup-python@v5 | |
- name: Upgrade pip and install linters | |
run: | | |
python -m pip install --upgrade pip | |
python -m pip install flake8 pydocstyle packaging | |
- name: flake8 PEP compliance checks | |
run: python -m flake8 anesthetic tests | |
- name: pydocstyle documentation style checks | |
run: python -m pydocstyle --convention=numpy anesthetic | |
- name: Count missing test fixtures | |
run: | | |
if [ $( grep -L 'close_figures_on_teardown' | |
$(grep -l 'matplotlib' tests/test*.py) | wc -w ) -ne 0] | |
then | |
missing_tests=$( grep -L 'close_figures_on_teardown' | |
$(grep -l 'matplotlib' tests/test*.py) ) | |
echo "$missing_tests are missing the | |
close_figures_on_teardown fixture." | |
exit 1 | |
fi | |
sphinx: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v2 | |
- uses: actions/setup-python@v2 | |
with: | |
python-version: '3.11' | |
- name: Upgrade pip and install doc requirements | |
run: | | |
python -m pip install --upgrade pip | |
python -m pip install -e ".[all,docs]" | |
- name: build documentation | |
run: | | |
cd docs | |
make clean | |
make html SPHINXOPTS="-W --keep-going -n" | |
pip: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
os: [ubuntu-latest] | |
python-version: ['3.9', '3.10', '3.11'] | |
extras: [true, false] | |
include: | |
- os: macos-latest | |
python-version: '3.11' | |
extras: true | |
- os: windows-latest | |
python-version: '3.11' | |
extras: true | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
python -m pip install -e ".[test]" | |
- name: Install extra dependencies | |
if: ${{ matrix.extras }} | |
run: | | |
python -m pip install -e ".[all]" | |
- name: Test with pytest | |
run: python -m pytest --cov=anesthetic tests | |
- name: Upload coverage to Codecov | |
uses: codecov/codecov-action@v1 | |
conda: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
os: [ubuntu-latest] | |
python-version: ['3.9', '3.10', '3.11'] | |
include: | |
- os: macos-latest | |
python-version: '3.11' | |
- os: windows-latest | |
python-version: '3.11' | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: conda-incubator/setup-miniconda@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
shell: bash -l {0} | |
run: | | |
conda config --append channels conda-forge | |
conda install pytest pytest-cov | |
conda install scipy numpy 'matplotlib>=3.6.1,<3.9.0' 'pandas>=2.0.0,<2.2.0' | |
- name: Test with pytest | |
shell: bash -l {0} | |
run: python -m pytest --cov=anesthetic tests | |
- name: Upload coverage to Codecov | |
uses: codecov/codecov-action@v1 | |
test-build-n-publish: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python 3.11 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: 3.11 | |
- name: Install pypa/build | |
run: python -m pip install build --user | |
- name: Build a binary wheel and a source tarball | |
run: python -m build --sdist --wheel --outdir dist/ | |
- name: Publish to Test PyPI | |
uses: pypa/gh-action-pypi-publish@release/v1 | |
continue-on-error: true | |
with: | |
password: ${{ secrets.TEST_PYPI_API_TOKEN }} | |
repository_url: https://test.pypi.org/legacy/ | |
skip_existing: true | |
minimum-dependencies: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python 3.9 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: 3.9 | |
- name: Upgrade pip and install tomli | |
run: | | |
python -m pip install --upgrade pip | |
python -m pip install tomli | |
- name: Install minimum dependencies | |
run: eval "python -m pip install $(./bin/min_dependencies.py)" | |
- name: Install anesthetic | |
run: python -m pip install -e ".[test]" | |
- name: Test with pytest | |
run: python -m pytest tests | |
latest-dependencies: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up latest stable Python 3 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: 3.x | |
- name: Upgrade pip and install tomli | |
run: | | |
python -m pip install --upgrade pip | |
python -m pip install tomli | |
- name: Install latest dependencies | |
run: eval "python -m pip install $(./bin/latest_dependencies.py)" | |
- name: Install pytest and anesthetic | |
run: | | |
python -m pip install pytest | |
python -m pip install --no-deps -e . | |
- name: Test with pytest | |
run: python -m pytest tests | |
check-for-new-versions: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up latest stable Python 3 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: 3.x | |
- name: Upgrade pip and install tomli and requests | |
run: | | |
python -m pip install --upgrade pip | |
python -m pip install tomli requests | |
- name: Install anesthetic | |
run: python -m pip install -e ".[test]" | |
- name: Check anesthetic dependencies are up to date | |
run: python -m pytest ./bin/check_up_to_date.py |