ReadPairs_ADV - QC.summary.txt

[bio-la]

Hi, thanks for the great tool!

can you tell me what is the difference between: (what does ADV stand for?)
ReadPairs_NoGene_MiddleOfNowhere 116320
ReadPairs_ADV_NoGene_MiddleOfNowhere 57130

they both have the same definition, but different numbers: ( ADV is always >= the other)

Number of reads or read-pairs that are not assigned to any gene, and that are more than 10kb from the nearest gene

many thanks!

[hartleys]

Just use the non-advanced one. The advanced one is a byproduct of an experimental system designed to count gene-body position on a gene-by-gene basis. It works a little differently.