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lilac v1.4
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@charlesshale charlesshale released this 23 Sep 00:29
· 5724 commits to master since this release
lilac-v1.4
eedf9fd

Functional:

  • choose non-wildcard over wildcard allele for somatic variants if solution has 50+% fragment support or more
  • fragments must support all overlapping bases of unmatched haplotype

Config:

  • optionally set HLA-Y threshold in config: hla_y_threshold (default 0.01)
  • optionally set fatal low coverage in config: fatal_low_coverage (default 300)

Bugs:

  • v1.4.2: ignore somatic variants outside HLA range
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