Append References #820
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Run tests | |
| on: | |
| push: | |
| branches: | |
| - dev | |
| tags-ignore: # exclude tags created by "ci_addons publish_github_release" | |
| - 'latest' | |
| - 'latest-tmp' | |
| pull_request: | |
| jobs: | |
| run-tests: | |
| name: ${{ matrix.name }} | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - { name: linux-python3.8-minimum , test-tox-env: py38-minimum , build-tox-env: build-py38-minimum , python-ver: "3.8" , os: ubuntu-latest } | |
| - { name: linux-python3.12 , test-tox-env: py312 , build-tox-env: build-py312 , python-ver: "3.12", os: ubuntu-latest } | |
| # NOTE config below with "upload-wheels: true" specifies that wheels should be uploaded as an artifact | |
| - { name: linux-python3.12-upgraded , test-tox-env: py312-upgraded , build-tox-env: build-py312-upgraded , python-ver: "3.12", os: ubuntu-latest , upload-wheels: true } | |
| - { name: windows-python3.8-minimum , test-tox-env: py38-minimum , build-tox-env: build-py38-minimum , python-ver: "3.8" , os: windows-latest } | |
| - { name: windows-python3.12-upgraded , test-tox-env: py312-upgraded , build-tox-env: build-py312-upgraded , python-ver: "3.12", os: windows-latest } | |
| - { name: macos-python3.8-minimum , test-tox-env: py38-minimum , build-tox-env: build-py38-minimum , python-ver: "3.8" , os: macos-latest } | |
| - { name: macos-python3.12-upgraded , test-tox-env: py312-upgraded , build-tox-env: build-py312-upgraded , python-ver: "3.12", os: macos-latest } | |
| steps: | |
| - name: Cancel non-latest runs | |
| uses: styfle/cancel-workflow-action@0.11.0 | |
| with: | |
| all_but_latest: true | |
| access_token: ${{ github.token }} | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: 'recursive' | |
| fetch-depth: 0 # tags are required for versioneer to determine the version | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-ver }} | |
| - name: Install build dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install tox | |
| python -m pip list | |
| - name: Run tox tests | |
| run: | | |
| tox -e ${{ matrix.test-tox-env }} | |
| - name: Build wheel and source distribution | |
| run: | | |
| tox -e ${{ matrix.build-tox-env }} | |
| ls -1 dist | |
| - name: Test installation from a wheel | |
| run: | | |
| tox -e wheelinstall --recreate --installpkg dist/*-none-any.whl | |
| - name: Upload distribution as a workspace artifact | |
| if: ${{ matrix.upload-wheels }} | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: distributions | |
| path: dist | |
| run-gallery-tests: | |
| name: ${{ matrix.name }} | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - { name: linux-gallery-python3.8-minimum , test-tox-env: gallery-py38-minimum , python-ver: "3.8" , os: ubuntu-latest } | |
| - { name: linux-gallery-python3.12-upgraded , test-tox-env: gallery-py312-upgraded, python-ver: "3.12", os: ubuntu-latest } | |
| - { name: windows-gallery-python3.8-minimum , test-tox-env: gallery-py38-minimum , python-ver: "3.8" , os: windows-latest } | |
| - { name: windows-gallery-python3.12-upgraded, test-tox-env: gallery-py312-upgraded, python-ver: "3.12", os: windows-latest } | |
| steps: | |
| - name: Cancel non-latest runs | |
| uses: styfle/cancel-workflow-action@0.11.0 | |
| with: | |
| all_but_latest: true | |
| access_token: ${{ github.token }} | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: 'recursive' | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-ver }} | |
| - name: Install build dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install tox | |
| python -m pip list | |
| - name: Run tox tests | |
| run: | | |
| tox -e ${{ matrix.test-tox-env }} | |
| run-tests-on-conda: | |
| name: ${{ matrix.name }} | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - { name: conda-linux-python3.8-minimum , test-tox-env: py38-minimum , build-tox-env: build-py38-minimum , python-ver: "3.8" , os: ubuntu-latest } | |
| - { name: conda-linux-python3.12-upgraded , test-tox-env: py312-upgraded , build-tox-env: build-py312-upgraded , python-ver: "3.12", os: ubuntu-latest } | |
| steps: | |
| - name: Cancel non-latest runs | |
| uses: styfle/cancel-workflow-action@0.11.0 | |
| with: | |
| all_but_latest: true | |
| access_token: ${{ github.token }} | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: 'recursive' | |
| fetch-depth: 0 # tags are required for versioneer to determine the version | |
| - name: Set up Conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| auto-activate-base: true | |
| activate-environment: true | |
| python-version: ${{ matrix.python-ver }} | |
| - name: Install build dependencies | |
| run: | | |
| conda config --set always_yes yes --set changeps1 no | |
| conda info | |
| conda install -c conda-forge tox | |
| conda list | |
| - name: Run tox tests | |
| run: | | |
| tox -e ${{ matrix.test-tox-env }} | |
| - name: Build wheel and source distribution | |
| run: | | |
| tox -e ${{ matrix.build-tox-env }} | |
| ls -1 dist | |
| - name: Test installation from a wheel | |
| run: | | |
| tox -e wheelinstall --recreate --installpkg dist/*-none-any.whl | |
| deploy-dev: | |
| name: Deploy pre-release from dev | |
| needs: [run-tests, run-gallery-tests, run-tests-on-conda] | |
| if: ${{ github.event_name == 'push' }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Cancel non-latest runs | |
| uses: styfle/cancel-workflow-action@0.11.0 | |
| with: | |
| all_but_latest: true | |
| access_token: ${{ github.token }} | |
| - name: Checkout repo with submodules | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: 'recursive' | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.11' | |
| - name: Download wheel and source distributions from artifact | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: distributions | |
| path: dist | |
| - name: Publish wheel and source distributions as a GitHub release | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install scikit-ci-addons | |
| ci_addons publish_github_release hdmf-dev/hdmf-zarr \ | |
| --prerelease-packages "dist/*" \ | |
| --prerelease-sha $GITHUB_SHA \ | |
| --prerelease-packages-clear-pattern "*" \ | |
| --prerelease-packages-keep-pattern "*dev<COMMIT_DISTANCE>*" \ | |
| --token ${{ secrets.BOT_GITHUB_TOKEN }} \ | |
| --re-upload |