stash changes

src/hdmf/common/table.py

@@ -7,6 +7,7 @@
 from collections import OrderedDict
 from typing import NamedTuple, Union
 from warnings import warn
+# import h5py
 
 import numpy as np
 import pandas as pd
@@ -1621,6 +1622,13 @@ def _get_helper(self, idx, index=False, join=False, **kwargs):
             return idx
         if not np.isscalar(idx):
             idx = np.asarray(idx)
+            # if isinstance(self.elements.data, h5py.Dataset):
+            #     # h5py datasets cannot index with an array of indices that are not in increasing order
+            #     # so unpack them one by one
+            #     ret = np.empty(idx.shape, dtype=self.elements.data.dtype)
+            #     for i, j in enumerate(idx.ravel()):
+            #         ret[i] = self.elements.get(j, **kwargs)
+            # else:
             ret = np.asarray(self.elements.get(idx.ravel(), **kwargs)).reshape(idx.shape)
             if join:
                 ret = ''.join(ret.ravel())

src/hdmf/container.py

@@ -937,7 +937,10 @@ def __getitem__(self, args):
 
     def get(self, args):
         if isinstance(self.data, (tuple, list)) and isinstance(args, (tuple, list, np.ndarray)):
+            # try:
             return [self.data[i] for i in args]
+            # except:
+                # breakpoint()
         if isinstance(self.data, h5py.Dataset) and isinstance(args, np.ndarray):
             # This is needed for h5py 2.9 compatibility
             args = args.tolist()