Repository of the scripts used in Rodriguez-Fos, et al. paper entitled "Mutational topography reflects clinical neuroblastoma heterogeneity"

Scripts for filtering and formatting all variant types (include general plots, e.g. oncoplot)

Variant_filtering

Scripts for running mutational signatures analysis for all the different variant types + TrackSigFreq scripts (include plots, e.g. correlation plots)

Mutational_signatures_analysis

Scripts for analyzing the different types of complex rearrangements (include plots, e.g. upset plot)

Complex_rearrangements_analysis

Scripts for performing the clustering analysis (include plots, e.g. clusters complex heatmap)

Clustering_analysis

Scripts for performing the survival analysis (include plots, e.g. Kaplan Meier plots)

Survival_analysis

Scripts for validating the mutational signatures in the validation cohort (include plots, e.g. correlation bewteen signatures from both cohorts)

Validation_cohort