add -print_metrics to jenkins test

heuermh · Apr 6, 2016 · 47dfa4d · 47dfa4d
1 parent 7823abd
commit 47dfa4d
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/scripts/jenkins-test b/scripts/jenkins-test
@@ -65,7 +65,7 @@ echo "Printing reads and fragments"
 "$ADAM" print "$READS" 1>/dev/null 2>/dev/null
 "$ADAM" print "$FRAGMENTS" 1>/dev/null 2>/dev/null
 echo "Printing read statistics"
-"$ADAM" flagstat "$READS"
+"$ADAM" flagstat -print_metrics "$READS"
 rm -rf "$ADAM_TMP_DIR"
 popd