BigWig Files

Scott Ouellette edited this page Jan 19, 2017 · 4 revisions

BigWig files

wget -P ~/Downloads \
    http://hgdownload.cse.ucsc.edu/goldenpath/hg19/encodeDCC/wgEncodeCaltechRnaSeq/wgEncodeCaltechRnaSeqHuvecR1x75dTh1014IlnaPlusSignalRep2.bigWig

Aggregation

python scripts/tile_bigWig.py \
   ~/Downloads/wgEncodeCaltechRnaSeqHuvecR1x75dTh1014IlnaPlusSignalRep2.bigWig \
   --output-file  \
   ~/Downloads/wgEncodeCaltechRnaSeqHuvecR1x75dTh1014IlnaPlusSignalRep2.hitile

python scripts/conversion_wrapper.py --input_file <full_path_to_input_file> --data_type bigwig
# creates <full_path_to_input_file>.multires.bw

python scripts/conversion_wrapper.py --input_file <full_path_to_input_file> --data_type hitile
# creates <full_path_to_input_file>.multires.hitile