fix(fhir): PPM-722 - Removed unecessary processing of old EXAMPLE eli…

…gibility questionnaire
hms-dbmi · Sep 16, 2021 · 4b3a982 · 4b3a982
1 parent 5cebbd8
commit 4b3a982
Showing 1 changed file with 0 additions and 102 deletions.
diff --git a/ppmutils/fhir.py b/ppmutils/fhir.py
@@ -5204,108 +5204,6 @@ def _flatten_example_participant(bundle, ppm_id, eligibility_questionnaire_id=No
         values = {}
         study_values = {}
 
-        # Get questionnaire answers
-        questionnaire_response = next(
-            (
-                q
-                for q in FHIR._find_resources(bundle, "QuestionnaireResponse")
-                if q["questionnaire"]["reference"] == f"Questionnaire/{PPM.Questionnaire.EXAMPLEQuestionnaire.value}"
-            ),
-            None,
-        )
-        if questionnaire_response and questionnaire_response.get("item"):
-            logger.debug(f"PPM/{ppm_id}/FHIR: Flattening QuestionnaireResponse/" f'{questionnaire_response["id"]}')
-
-            # Map linkIds to keys
-            text_answers = {
-                "question-8": "diagnosis",
-                "question-20": "pcp",
-                "question-21": "oncologist",
-            }
-
-            date_answers = {
-                "question-1": "birthdate",
-                "question-10": "date_diagnosis",
-            }
-
-            # Iterate items
-            for link_id, key in text_answers.items():
-                try:
-                    # Get the answer
-                    answer = next(
-                        i["answer"][0]["valueString"] for i in questionnaire_response["item"] if i["linkId"] == link_id
-                    )
-
-                    # Assign it
-                    study_values[key] = answer
-                except Exception as e:
-                    logger.exception(
-                        f"PPM/{ppm_id}/Questionnaire/{link_id}: {e}",
-                        exc_info=True,
-                        extra={
-                            "ppm_id": ppm_id,
-                            "link_id": link_id,
-                            "key": key,
-                            "questionnaire_response": f"QuestionnaireResponse/" f'{questionnaire_response["id"]}',
-                            "item": next(
-                                (i for i in questionnaire_response["item"] if i["linkId"] == link_id),
-                                "",
-                            ),
-                        },
-                    )
-
-                    # Assign default value
-                    study_values[key] = "---"
-
-            # Iterate date items and attempt to parse dates, otherwise treat as text
-            for link_id, key in date_answers.items():
-
-                try:
-                    # Get the answer
-                    answer = next(i["answer"][0] for i in questionnaire_response["item"] if i["linkId"] == link_id)
-
-                    try:
-                        # Check type
-                        if answer.get("valueDate") or answer.get("valueDateTime"):
-                            # Date is already a date object, assign it
-                            study_values[key] = answer.get("valueDate", answer.get("valueDateTime"))
-
-                        elif answer.get("valueString"):
-
-                            # Attempt to parse it
-                            answer_date = parse(answer.get("valueString"))
-
-                            # Assign it
-                            study_values[key] = answer_date.isoformat()
-
-                        else:
-                            logger.error(f"PPM/{ppm_id}/Questionnaire/{link_id}: Unhandled answer type: {answer}")
-
-                    except ValueError:
-                        logger.debug(f"PPM/{ppm_id}/Questionnaire/{link_id}: Invalid date: {answer}")
-
-                        # Assign the raw value
-                        study_values[key] = answer
-
-                except Exception as e:
-                    logger.exception(
-                        f"PPM/{ppm_id}/Questionnaire/{link_id}: Missing response: {e}",
-                        exc_info=True,
-                        extra={
-                            "ppm_id": ppm_id,
-                            "link_id": link_id,
-                            "key": key,
-                            "questionnaire_response": f"QuestionnaireResponse/" f'{questionnaire_response["id"]}',
-                            "item": next(
-                                (i for i in questionnaire_response["item"] if i["linkId"] == link_id),
-                                "",
-                            ),
-                        },
-                    )
-
-                    # Assign default value
-                    study_values[key] = "---"
-
         # Check for points of care questionnaire
         questionnaire_response = next(
             (