GitHub - hongenxu/somaticseq: An ensemble approach to accurately detect somatic mutations using SomaticSeq

SomaticSeq: An ensemble approach to accurately detect somatic mutations

See http://bioinform.github.io/somaticseq/ for help and downloads.
Detailed documentation is included in the package. It's located in docs/Manual.pdf.
Feel free to report issues and/or ask questions at the Issues page.
For a quick description of SomaticSeq, you may watch this 8-minute video:

Name		Name	Last commit message	Last commit date
Latest commit History 394 Commits
DREAM_Stage_3		DREAM_Stage_3
Run_5_callers		Run_5_callers
docs		docs
r_scripts		r_scripts
r_scripts_NoSNP		r_scripts_NoSNP
utilities		utilities
.gitignore		.gitignore
LICENSE.txt		LICENSE.txt
README.md		README.md
SSeq_merged.vcf2tsv.py		SSeq_merged.vcf2tsv.py
SSeq_tsv2vcf.py		SSeq_tsv2vcf.py
SomaticSeq.Wrapper.sh		SomaticSeq.Wrapper.sh
SomaticSeqYoutube.png		SomaticSeqYoutube.png
VERSION		VERSION
attach_pileupVAF.py		attach_pileupVAF.py
genomic_file_handlers.py		genomic_file_handlers.py
modify_MuTect.py		modify_MuTect.py
modify_VJSD.py		modify_VJSD.py
pileup_reader.py		pileup_reader.py
read_info_extractor.py		read_info_extractor.py
score_Somatic.Variants.py		score_Somatic.Variants.py
split_mergedBed.py		split_mergedBed.py

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