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Fix pdc ls #154

Merged
merged 23 commits into from
Oct 23, 2023
Merged

Fix pdc ls #154

merged 23 commits into from
Oct 23, 2023

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houjun
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@houjun houjun commented Oct 12, 2023

Replace #139

@houjun houjun temporarily deployed to internal October 12, 2023 23:05 — with GitHub Actions Inactive
@houjun houjun temporarily deployed to internal October 13, 2023 17:55 — with GitHub Actions Inactive
@houjun houjun temporarily deployed to internal October 13, 2023 17:58 — with GitHub Actions Inactive
@houjun houjun temporarily deployed to internal October 13, 2023 18:01 — with GitHub Actions Inactive
@houjun houjun temporarily deployed to internal October 13, 2023 18:25 — with GitHub Actions Inactive
@houjun houjun temporarily deployed to internal October 13, 2023 20:56 — with GitHub Actions Inactive
@jeanbez jeanbez temporarily deployed to internal October 23, 2023 16:37 — with GitHub Actions Inactive
@jeanbez jeanbez merged commit bd46c46 into develop Oct 23, 2023
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houjun added a commit that referenced this pull request Oct 23, 2023
* pdc import, export, ls compiled successfully

* removed requested files

* formatting issues

* changed install tools

* gets checkpoint files

* grabbing checkpoint files from within sub-directories, minor comments

* Committing clang-format changes

* Committing clang-format changes

* Fix a few issues with pdc_ls

* Committing clang-format changes

---------

Co-authored-by: nickaruwang <nickwan0318@gmail.com>
Co-authored-by: Nick Wang <66816536+nickaruwang@users.noreply.github.com>
Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com>
Co-authored-by: Jean Luca Bez <jlbez@lbl.gov>
jeanbez added a commit that referenced this pull request Jan 9, 2024
* pdc import, export, ls compiled successfully

* removed requested files

* formatting issues

* changed install tools

* gets checkpoint files

* grabbing checkpoint files from within sub-directories, minor comments

* Committing clang-format changes

* Committing clang-format changes

* Fix a few issues with pdc_ls

* Committing clang-format changes

---------

Co-authored-by: nickaruwang <nickwan0318@gmail.com>
Co-authored-by: Nick Wang <66816536+nickaruwang@users.noreply.github.com>
Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com>
Co-authored-by: Jean Luca Bez <jlbez@lbl.gov>
@jeanbez jeanbez deleted the fix_pdc_ls branch March 5, 2024 18:24
jeanbez added a commit that referenced this pull request Sep 10, 2024
* fix cmake mercury_util not found issue

* update for Julia support

* fix hdf5.h not found for src/tools

* update container config

* add libhdf5-dev for Github Actions

* update CMake for HDF5 in tools

* update logic for finding HDF5

* update

* remove use system hdf5

* delete useless find library

* update findHDF5

* Feature/dart (#11)

Update to avoid fixing compilation issue on src/tools (due to : HDF5 cannot be found)

* Use cc on Perlmutter (#161)

Dr. Tang fixed a compilation issue in NERSC CI where HDF5 cannot be detected even if the cray-parallel-hdf5 module is loaded on Perlmultter.

* update with fixes on tools and llsm example

* add gitignore for llsm

* update gitignore

* Feature/dart (#12)

* fix formatting

* update clangformat10

* update base dockerfile

* Add clang-format10 to docker container. Also fixed clang-format.

Add clang-format10 to docker container. Also fixed clang-format.

* Fix pdc ls (#154)

* pdc import, export, ls compiled successfully

* removed requested files

* formatting issues

* changed install tools

* gets checkpoint files

* grabbing checkpoint files from within sub-directories, minor comments

* Committing clang-format changes

* Committing clang-format changes

* Fix a few issues with pdc_ls

* Committing clang-format changes

---------

Co-authored-by: nickaruwang <nickwan0318@gmail.com>
Co-authored-by: Nick Wang <66816536+nickaruwang@users.noreply.github.com>
Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com>
Co-authored-by: Jean Luca Bez <jlbez@lbl.gov>

* update documentation

* update document 

update document

* sync branch 

sync branch

* no UUID module is required

* update document and make UUID an optional package

* update docker repo name

* updating docker repo name and make UUID optional

* Complete support for Docker and Github Codespace  (#157)

Include support for Docker and Github Codespace so we can run our dev environment with the support of Docker.

* SQLite and RocksDB support for KVtags (#165)

SQLite and RocksDB support for KVtags

* fix round for tag delete

* update test

* bulki update

* BULKI base type worked

* BULKI all tests done

* new index code

* update

* update new test

* update csv bench

* update

* update script

* adding python scripts for generating large metadata set for LLSM application

* update json schema

* better json validator

* update importer

* update code for non-MPI compatibility

* update llsm converter

* update LLSM data converter

* split files

* update .gitignore

* update

* add timing info

* update

* update tag size

* detect object creation failure

* update

* update object name with date

* update for robustness

* update

* update JMD_DEBUG option

* update output for overall output

* update inttypes.h

* update

* update extractor

* update inttypes.h

* update converter

* update importer information

* Update getting_started.rst (#184)

* Removing gres option for ctest (#182)

* Removing gres option for ctest
* Removing gres option from scripts
* Update check for core

---------

Co-authored-by: Hyunju Oh <hjoh16@login15.chn.perlmutter.nersc.gov>
Co-authored-by: Jean Luca Bez <jlbez@lbl.gov>

* fix issue

* fixed search issues

* update for infix

* update

* index persistence still needs improvement

* update

* enable cache by default (#187)

* Removing PDC macro (#189)

* Removing gres option for ctest
* Removing gres option from scripts
* Update check for core
* Remove PDC macro
* Committing clang-format changes

---------

Co-authored-by: Hyunju Oh <hjoh16@login15.chn.perlmutter.nersc.gov>
Co-authored-by: Jean Luca Bez <jlbez@lbl.gov>
Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com>

* update

* range query done'

* range query local test passed

* multi-condition in progress

* clean up code

* add comments

* new benchmark

* update

* update range query test

* update cmake:

* update

* update

* update

* update

* someta range query

* someta range query

* someta range query

* fix value serialization

* update

* update double free

* update

* update

* update

* fixed pointer issue

* rb_tree delete fixed, now need to check index persistence

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* BDCATS fix (#193)

* Fix issues with bdcats_batch

* Committing clang-format changes

---------

Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com>

* update

* clean up code

* update test sh

* IDIOMS persistence DONE

* update

* remove old kvtag benchmarks

* update

* update

* update changes

* dart info

* update

* multi data type for the same key, supported now

* Monitoring changes from feature/dart to develop (#18)

Major changes: 
* IDIOMS -> affix-based query benchmark
* IDIOMS -> Simulation Test
* IDIOMS -> Multi data type supported for the same key
* IDIOMS -> Range Query and Exact Query for Numeric Values
* IDIOMS -> benchmark for numeric values (exact search and range query)
* IDIOMS -> Index Persistence
* BULKI -> A data serialization and deserialization mechanism.

* fix CMakeLists.txt

* update

* update format

* update BULKI interface order

* BULKI API sorted

* add idioms ci test

* Feature/dart (#20)

1. add documentation about BULKI and IDIOMS query conditions
2. add ci test for IDIOMS
3. optimized BULKI to save space on its metadata fields.

* Feature/dart (#22)

update version

* update

* update

* update

* remove unnecessary .bin file

* update

* update

---------

Co-authored-by: Houjun Tang <htang4@lbl.gov>
Co-authored-by: nickaruwang <nickwan0318@gmail.com>
Co-authored-by: Nick Wang <66816536+nickaruwang@users.noreply.github.com>
Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com>
Co-authored-by: Jean Luca Bez <jlbez@lbl.gov>
Co-authored-by: Hyunju Oh <oh.693@osu.edu>
Co-authored-by: Hyunju Oh <hjoh16@login15.chn.perlmutter.nersc.gov>
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4 participants