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Merge pull request #57 from hpc-unibe-ch/56-fix-easybuild-commands
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Fix easysbuild syntax for eb-install-X scripts
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grvlbit authored Sep 7, 2023
2 parents 74a9214 + 5e4591f commit 0c50ab6
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6 changes: 3 additions & 3 deletions docs/software/EasyBuild.md
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Expand Up @@ -16,7 +16,7 @@ The following steps need are necessary:
Depending if you want to install the package in user or a group space you need to load the related module and the `EasyBuild` module, e.g.:

```Bash
module load Workspace ### if you want to install into your HOME use Workspace_Home
module load Workspace ### if you want to install into your HOME use module load Workspace_Home
module load EasyBuild
```

Expand Down Expand Up @@ -105,7 +105,7 @@ Depending on the package and its target usage one or more software stacks should
After selecting the package installation recipe and the target software stack, the installation process can be submitted.
With the following commands, SLURM job files will be created, and submitted to the desired compute nodes. There the packages are build and module files created. The general syntax is:
```Bash
eb_install_{all,generic} [options] [easybuild options] <easyconfig>.eb
eb-install-{all,generic} [options] [easybuild options] <easyconfig>.eb
```
Additional SLURM arguments can be selected using the `--slurm-args` option, e.g. `--slurm-args='--account=xyz --time=00:10:00 --cpus-per-task'`. If specific architectures should be selected use e.g. `--arch='broadwell ivy'`. After this options, EasyBuild arguments can be provided without prefix, e.g. `--robot`.

Expand Down Expand Up @@ -261,4 +261,4 @@ $ module load Workspace_Home EasyBuild
$ eb --tmpdir=$TMPDIR --robot --hide-deps=binutils,gettext,Mesa RELION-3.1.3-fosscuda-2020b.eb
```

This may also be used when compiling **on** a specific GPU architecture.
This may also be used when compiling **on** a specific GPU architecture.

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