Update file.py #63
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Update file.py #63
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j-uranic
commented
Oct 30, 2024
j-uranic
commented
- Fixed comment on Visium no probes
- Added 10X Multiome OBI term mapping
- Added placeholder mapping for assays without published data: DBiT, Hi-Fi Slide, Molecular Cartography, nanoSPLITS, Second Harmonic Generation, Secondary Ion Mass Spectrometry, Thick section Multiphoton MxIF, Xenium
- Fixed comment on Visium no probes - Added 10X Multiome OBI term mapping - Added placeholder mapping for assays without published data: DBiT, Hi-Fi Slide, Molecular Cartography, nanoSPLITS, Second Harmonic Generation, Secondary Ion Mass Spectrometry, Thick section Multiphoton MxIF, Xenium
Added AFM dataset_type for datasets without data_type field
Add dataset_type value for Bulk RNAseq
Remove Bulk RNAseq dataset_type mapping; value is not unique
Added snRNAseq (10x Genomics v3) mapping for SenNet data_type and moved all OBI:003109 maps together
Add HuBMAP data_type value for DARTfish
Added OBI mapping for snATACseq (null, ATACseq) and snRNAseq (10x Genomics v3) (null, RNAseq); updated mapping for snATACseq (SNAREseq2) (SNARE-ATACseq2, ATACseq)
Removed RNAseq and ATACseq due to potential duplicate values with different OBI terms
Add Stained Slides (SenNet data_type value for H&E Stained Microscopy) OBI mapping
icaoberg
approved these changes
Nov 13, 2024
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