Re-architect backend tornado http server. Adds supporting decoupled library packages. (Large PR)#80

Merged

aaraney merged 133 commits intohydroshare:masterfrom aaraney:ResourceManager-work

Sep 27, 2021

+3,499-816

Commits on Jul 8, 2021

add pathlib helper utilities
Austin Raney
committed
unit test for pathlib utils
Austin Raney
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remove erroneous shebang
Austin Raney
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use relative imports instead of re-importing
Austin Raney
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make utlities dir a python subpackage
Austin Raney
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refactor ResourceManager constructor
Austin Raney
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refactor authenticate and is_authenticated methods
Austin Raney
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return user info on auth
Austin Raney
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refactor save_resource_locally
Austin Raney
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Commits on Jul 9, 2021

remove unnecessary shebang and imports
Austin Raney
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add httpstatus import and use relative local imports
Austin Raney
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minor formatting and add TODO: move constants to config file
Austin Raney
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temporarily change baseclass of BaseRequestHandler for dev work
Austin Raney
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override base class prepare to return 401 unauthorized if not authenticated
Austin Raney
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use httpstatus enum to set options status in base class
Austin Raney
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HeaderMixIn class that adds headers in _custom_headers instance variable
Austin Raney
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Child Handlers now impliment HeaderMixIn. Added TODOs and Notes
Austin Raney
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remove redundant is_authenticated logic from child handlers
Austin Raney
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Commits on Jul 14, 2021

add pydantic as setup requirement
Austin Raney
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start transition from hs_restclient to hsclient. Add sessionstruct and some pydantic api models
Austin Raney
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pydantic api models
Austin Raney
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add session struct container for holding session and session cookie
Austin Raney
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add session struct unit tests
Austin Raney
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Commits on Jul 15, 2021

remove remember field from auth api model
Austin Raney
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session mixin that extends functionality of IPythonHandler
Austin Raney
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add prepare to base handler. Requires user auth or redirects. Also adds login url path to base handler
Austin Raney
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mixin for mutating global session object. Allows for speration from child classes that don't need this functionality
Austin Raney
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LoginHandler updated. Credentials no longer stored. A salted secure cookie created post login is used to retain login state.
Austin Raney
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update LoginHandler docstring
Austin Raney
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replace previous server unit tests. More to come
Austin Raney
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add pytest-tornado to development requirements
Austin Raney
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pytest config file. By default print logs. Disable using 'pytest -o log_cli=false'
Austin Raney
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move server.py if name == main functionality to module level __main__.py. Now run using 'python -m hydroshare_jupyter_sync'
Austin Raney
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add id field to SessionStruct
Austin Raney
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update login logic to store user id
Austin Raney
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fix session struct type hints
Austin Raney
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UserInfoHandler now uses hsclient. Remove TestApp from server.py
Austin Raney
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remove if name == main from server.py
Austin Raney
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Commits on Jul 16, 2021

add CLI to __main__. Can pass port, hostname, --no-debug, and config file. TODO: impliment config logic
Austin Raney
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add username field and implimentation to session struct
Austin Raney
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add note regarding Hsmd5Handler. Not sure that Hsmd5Handler is implimented
Austin Raney
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add and implement pydantic schema CollectionOfResourceMetadata. a list of hsclient.json_models::ResourcePreview fields that have been subset
Austin Raney
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add tests for CollectionOfResourceMetadata
Austin Raney
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add a few comments and todos to server endpoints
Austin Raney
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pathlib utilities for verifying if a path is a descendant of some parent
Austin Raney
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add pathlib utils tests
Austin Raney
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Enum and schema for creating new hydroshare resource via rest
Austin Raney
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Commits on Jul 19, 2021

Commits on Jul 21, 2021

impliment configuration parser in main
Austin Raney
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expand and resolve data and log paths in config
Austin Raney
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add ResourceFiles pydantic api model. This is mainly for marshalling output
Austin Raney
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Extend hsclient::HydroShare with HydroShareWithResourceCache. As the name implies, it adds caching by overriding the resource method in the base class
Austin Raney
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add/replace rest api handlers for listing and downloading hydroshare resources/files
Austin Raney
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add hs resource strategy class tree and strategy factory
Austin Raney
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update gitignore to omit lib dir outside of root context
Austin Raney
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add boolean api model
Austin Raney
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update and rename resource handler to impliment resource factory. Now can download either files or folders
Austin Raney
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update class name in HydroShareResourceEntityHandler static method
Austin Raney
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add 'data_path' property to base handler.
Austin Raney
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Commits on Jul 23, 2021

ResourceCreationRequest now uses regex to verify that path names do not contain ~ or ..
Austin Raney
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add data_path property to base handler
Austin Raney
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add LocalResourceEntityHandler for uploading local HS resource data to hydroshare
Austin Raney
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unit test regex implimentation in ResourceFiles
Austin Raney
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require 'Content-Type: application/json' in login requests
Austin Raney
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remove erroneous test_hello_world unit test
Austin Raney
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Commits on Jul 29, 2021

Commits on Aug 5, 2021

rework root __init__.py. Now supports lab and server extension.
Austin Raney
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load config data from string not file object
Austin Raney
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Commits on Aug 13, 2021

Commits on Aug 17, 2021

Commits on Aug 18, 2021

use data_path and log_path as config file deserialized names. These still reference their respective alias values data and log in config files
Austin Raney
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update config file unit tests
Austin Raney
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no longer manually set application config settings in TestApp. instead, unpack dictionary
Austin Raney
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jupyter server extension now utilizes configuration settings.
Austin Raney
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add deprecated comment to handlers no longer used. Aid in future refactor and make hydroshare#80 's reviewer's lives easier.
Austin Raney
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Commits on Aug 23, 2021

update fs_event_handler_factory docstring to note the one-to-one relationship between resources and FSEventHandlers
Austin Raney
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change FSEventHanlder logging from INFO to DEBUG level
Austin Raney
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Commits on Aug 25, 2021

Commits on Sep 27, 2021