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eelsdb blocks requests bugfix #66

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merged 4 commits into from
Jul 11, 2024
Merged

eelsdb blocks requests bugfix #66

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46322a7
eelsbd blocks requests bugfix
PauTorru Jul 2, 2024
71d7e89
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jul 2, 2024
f6f8925
Add changelog entry
PauTorru Jul 10, 2024
7694c00
Fix documentation link to zenodo
ericpre Jul 11, 2024
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2 changes: 1 addition & 1 deletion doc/intro.rst
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Original file line number Diff line number Diff line change
Expand Up @@ -84,7 +84,7 @@ Citing eXSpy

If eXSpy has been significant to a project that leads to an academic
publication, please acknowledge that fact by citing it. The DOI in the
badge below is the `Concept DOI <https://help.zenodo.org/faq/#versioning>`_ of
badge below is the `Concept DOI <https://support.zenodo.org/help/en-gb/1-upload-deposit/97-what-is-doi-versioning>`_ of
eXSpy. It can be used to cite the project without referring to a specific
version. If you are citing eXSpy because you have used it to process data,
please use the DOI of the specific version that you have employed. You can
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12 changes: 10 additions & 2 deletions exspy/misc/eels/eelsdb.py
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Expand Up @@ -248,8 +248,14 @@ def eelsdb(
if show_progressbar is None:
show_progressbar = preferences.General.show_progressbar

headers = {
"User-Agent": "Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/126.0.0.0 Safari/537.36"
}
request = requests.get(
"https://api.eelsdb.eu/spectra", params=params, verify=verify_certificate
"https://api.eelsdb.eu/spectra",
params=params,
verify=verify_certificate,
headers=headers,
)
spectra = []
jsons = request.json()
Expand All @@ -271,7 +277,9 @@ def eelsdb(
f"Permalink: {json_spectrum['permalink']}"
)
continue
msa_string = requests.get(download_link, verify=verify_certificate).text
msa_string = requests.get(
download_link, verify=verify_certificate, headers=headers
).text
try:
s = dict2signal(parse_msa_string(msa_string)[0])
emsa = s.original_metadata
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1 change: 1 addition & 0 deletions upcoming_changes/66.bugfix.rst
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@@ -0,0 +1 @@
Fix blocked eelsdb queries