fixed biopython incompatibility

ialbert · Jan 5, 2024 · 676bcec · 676bcec
1 parent 7921329
commit 676bcec
Show file tree

Hide file tree

Showing 4 changed files with 3 additions and 4 deletions.
diff --git a/biorun/__init__.py b/biorun/__init__.py
@@ -5,7 +5,7 @@
 #
 import sys
 # Global package version
-VERSION = "1.6.0"
+VERSION = "1.6.1"
 
 try:
     from signal import signal, SIGPIPE, SIG_DFL

diff --git a/biorun/data/search_assembly.json b/biorun/data/search_assembly.json
@@ -20,7 +20,7 @@
         "gbrs_paired_asm": "GCF_000003085.2",
         "paired_asm_comp": "identical",
         "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/003/085/GCA_000003085.2_ASM308v2",
-        "excluded_from_refseq": "superseded by newer assembly for species",
+        "excluded_from_refseq": "",
         "relation_to_type_materialasm_not_live_date": ""
     }
 ]
diff --git a/biorun/data/search_srr.json b/biorun/data/search_srr.json
@@ -6,7 +6,6 @@
         "sample_description": "Zaire ebolavirus genome sequencing from 2014 outbreak in Sierra Leone",
         "first_public": "2015-06-05",
         "country": "Sierra Leone",
-        "tax_id": "186538",
         "scientific_name": "Zaire ebolavirus",
         "fastq_bytes": "699204879;605646780",
         "base_count": "1685747974",

diff --git a/requirements.txt b/requirements.txt
@@ -1,4 +1,4 @@
-biopython >= 1.80
+biopython == 1.81
 requests
 tqdm
 pytest