ci: install scipy

icecube · Mar 24, 2024 · a410df7 · a410df7
1 parent 4b45035
commit a410df7
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Showing 2 changed files with 5 additions and 5 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -33,7 +33,7 @@ jobs:
         uses: actions/setup-python@v2
         with:
           python-version: ${{ matrix.python-version }}
-      - run: pip install numpy
+      - run: pip install numpy scipy
       - run: sudo apt-get install libsuitesparse-dev libbtbb-dev liblapack-dev libcfitsio-dev libmetis-dev libgsl-dev
       - run: cmake -DPython_EXECUTABLE=$(which python) . && make && sudo make install
       - run: python -c "import photospline"
@@ -53,7 +53,7 @@ jobs:
         uses: actions/setup-python@v2
         with:
           python-version: ${{ matrix.python-version }}
-      - run: pip install numpy
+      - run: pip install numpy scipy
       - run: brew install suite-sparse cfitsio gsl
       - run: cmake -DPython_EXECUTABLE=$(which python) . && make && make install
       - run: python -c "import photospline"
@@ -78,7 +78,7 @@ jobs:
           githubToken: ${{ github.token }}
           install: |
             apt-get update -q -y
-            apt-get install -q -y cmake clang libsuitesparse-dev libbtbb-dev liblapack-dev libcfitsio-dev libmetis-dev libgsl-dev python3-dev python3-numpy
+            apt-get install -q -y cmake clang libsuitesparse-dev libbtbb-dev liblapack-dev libcfitsio-dev libmetis-dev libgsl-dev python3-dev python3-numpy python3-scipy
           run: |
             cmake -DPython_EXECUTABLE=$(which python3) .
             make

diff --git a/test/test_nnls.py b/test/test_nnls.py
@@ -6,7 +6,7 @@
 class TestNNLS(unittest.TestCase):
     def setUp(self):
         try:
-            from scipy import sparse
+            from scipy import sparse  # type: ignore[import]
         except ImportError:
             raise unittest.SkipTest("test requires scipy")
 
@@ -18,7 +18,7 @@ def testSparseIsSparse(self):
         self.assertEqual(len(self.Asp.data), 3)
 
     def testImplementationMatchesScipy(self):
-        from scipy import optimize
+        from scipy import optimize  # type: ignore[import]
 
         np.testing.assert_allclose(
             photospline.nnls(self.Asp, self.b),