icecube · kjmeagher · Nov 20, 2023 · Nov 20, 2023
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -7,46 +7,42 @@ ci:
   autoupdate_schedule: quarterly
 repos:
   - repo: https://github.com/pre-commit/mirrors-prettier
-    rev: v3.0.3
+    rev: v3.1.0
     hooks:
       - id: prettier
   - repo: https://github.com/fsfe/reuse-tool
     rev: v2.1.0
     hooks:
       - id: reuse
-  - repo: https://github.com/psf/black
-    rev: 23.9.1
+  - repo: https://github.com/codespell-project/codespell
+    rev: v2.2.6
     hooks:
-      - id: black
+      - id: codespell
   - repo: https://github.com/asottile/blacken-docs
     rev: "1.16.0"
     hooks:
       - id: blacken-docs
         args: [-l 100]
-  - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.0.292
+  - repo: https://github.com/pre-commit/mirrors-mypy
+    rev: v1.7.0
     hooks:
-      - id: ruff
-        args: [--fix, --show-fixes]
+      - id: mypy
+        files: simweights
+        additional_dependencies: [numpy]
+        exclude: ^contrib/
   - repo: https://github.com/pycqa/pylint
-    rev: v3.0.0
+    rev: v3.0.1
     hooks:
       - id: pylint
         files: simweights
         exclude: ^contrib/
         additional_dependencies: [numpy, pandas]
-  - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.5.1
-    hooks:
-      - id: mypy
-        files: simweights
-        additional_dependencies: [numpy]
-        exclude: ^contrib/
-  - repo: https://github.com/codespell-project/codespell
-    rev: v2.2.6
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.1.6
     hooks:
-      - id: codespell
-        args: [-L, livetime]
+      - id: ruff
+        args: [--fix, --show-fixes]
+      - id: ruff-format
   - repo: https://github.com/PyCQA/doc8
     rev: "v1.1.1"
     hooks:
@@ -67,10 +63,9 @@ repos:
       - id: forbid-crlf
       - id: forbid-tabs
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.4.0
+    rev: v4.5.0
     hooks:
       - id: check-added-large-files
-      - id: check-ast
       - id: check-builtin-literals
       - id: check-case-conflict
       - id: check-docstring-first

diff --git a/contrib/book_simweights_testdata.py b/contrib/book_simweights_testdata.py
@@ -4,6 +4,8 @@
 #
 # SPDX-License-Identifier: BSD-2-Clause
 
+"""Script to generate the test data used by simweights testing."""
+
 import os.path
 import sys
 import tarfile
@@ -15,6 +17,7 @@
 
 
 def fake_event_header(frame: dict) -> None:
+    """Create a fake event header so the splitter can do its thing."""
     header = dataclasses.I3EventHeader()
     header.run_id = 0
     header.event_id = fake_event_header.event_id

diff --git a/contrib/print_flux.py b/contrib/print_flux.py
@@ -4,6 +4,8 @@
 #
 # SPDX-License-Identifier: BSD-2-Clause
 
+"""Script to print out values of the specified flux."""
+
 from sys import argv
 
 import numpy as np

diff --git a/docs/conf.py b/docs/conf.py
@@ -2,7 +2,7 @@
 #
 # SPDX-License-Identifier: BSD-2-Clause
 
-# Configuration file for the Sphinx documentation builder.
+"""Configuration file for the Sphinx documentation builder."""
 #
 # This file only contains a selection of the most common options. For a full
 # list see the documentation:

diff --git a/examples/tutorial_corsika.py b/examples/tutorial_corsika.py
@@ -13,8 +13,7 @@
 
 CORSIKA_DATASET_DIR = Path("/data/sim/IceCube/2016/filtered/level2/CORSIKA-in-ice/20789/")
 corsika_filelist = sorted(
-    str(f)
-    for f in CORSIKA_DATASET_DIR.glob("0000000-0000999/Level2_IC86.2016_corsika.020789.00000*.i3.zst")
+    str(f) for f in CORSIKA_DATASET_DIR.glob("0000000-0000999/Level2_IC86.2016_corsika.020789.00000*.i3.zst")
 )
 
 weight_keys = [

diff --git a/examples/tutorial_nugen.py b/examples/tutorial_nugen.py
@@ -18,10 +18,7 @@ def get_most_energetic_muon(mmclist: simclasses.I3MMCTrackList) -> float:
     emax = 0
     for muon in list(mmclist):
         particle = muon.particle
-        if (
-            particle.type in (dataclasses.I3Particle.MuMinus, dataclasses.I3Particle.MuPlus)
-            and particle.total_energy > emax
-        ):
+        if particle.type in (dataclasses.I3Particle.MuMinus, dataclasses.I3Particle.MuPlus) and particle.total_energy > emax:
             emax = particle.total_energy
     return emax
 
@@ -43,9 +40,7 @@ def get_most_energetic_muon(mmclist: simclasses.I3MMCTrackList) -> float:
 ]
 
 DATASET_DIR = Path("/data/sim/IceCube/2016/filtered/level2/neutrino-generator/21217")
-filelist = sorted(
-    str(f) for f in DATASET_DIR.glob("0000000-0000999/Level2_IC86.2016_NuMu.021217.00000*.i3.zst")
-)
+filelist = sorted(str(f) for f in DATASET_DIR.glob("0000000-0000999/Level2_IC86.2016_NuMu.021217.00000*.i3.zst"))
 MCmuonEnergy_nugen = np.array([])
 I3MCWeightDict: dict = {k: [] for k in weight_keys}
 

diff --git a/pyproject.toml b/pyproject.toml
@@ -44,61 +44,57 @@ Source = "https://github.com/icecube/simweights"
 Documentation = "https://docs.icecube.aq/simweights/main"
 Collaboration = "https://icecube.wisc.edu"
 
-[tool.black]
-line-length = 108
-target-version = ['py38']
+[tool.pytest.ini_options]
+minversion = 7.0
+testpaths = ["tests"]
+log_cli_level = "INFO"
+xfail_strict = true
+filterwarnings = ["error"]
+addopts = ["-ra", "--strict-config", "--strict-markers", "--cov=simweights", "-W ignore"]
 
 [tool.coverage.run]
 source = ["simweights"]
 command_line = "-m pytest"
 omit = ["*/simweights/cmdline.py"]
 
+[tool.coverage.report]
+exclude_also = ["from numpy.typing import"]
+
+[tool.codespell]
+skip = '_build'
+ignore-words-list = 'livetime'
+
 [tool.mypy]
 plugins = "numpy.typing.mypy_plugin"
 show_error_codes = true
 warn_unreachable = true
 enable_error_code = ["ignore-without-code", "redundant-expr", "truthy-bool"]
 
 [tool.pylint.format]
-max-line-length = "108"
+max-line-length = "128"
 
 [tool.pylint.messages_control]
 disable = "C0114"
 
-[tool.pytest.ini_options]
-minversion = 7.0
-testpaths = ["tests"]
-log_cli_level = "INFO"
-xfail_strict = true
-filterwarnings = ["error"]
-addopts = ["-ra", "--strict-config", "--strict-markers", "--cov=simweights", "-W ignore"]
-
-[tool.doc8]
-max-line-length=108
-
 [tool.ruff]
 select = ["ALL"]
 fixable = ["I"]
 ignore = [
-    "ANN101", # missing-type-self
     "ANN401", # any-type
     "FBT",    # flake8-boolean-trap
-    "INP",    # flake8-no-pep420
-    "T20",    # flake8-print
-    "TCH",    # flake8-type-checking
     "S101",   # assert-used
-    "N801",
-    "PYI024",
+    "COM812", #confilcts with ruff formatter
+    "ISC001", #confilcts with ruff formatter
     ]
-line-length = 108
+line-length = 128
 target-version = "py38"
+namespace-packages = ["examples", "contrib", "docs"]
 
 [tool.ruff.pydocstyle]
 convention = "google"
 
 [tool.ruff.per-file-ignores]
-"contrib/*" = ["D"]
-"docs/*" = ["D"]
+"contrib/*" = ["T201"]
 "tests/*" = [
     "D",      # pydocstyle
     "N",      # pep8-naming
@@ -113,4 +109,8 @@ convention = "google"
 "examples/*" = [
     "D",      # pydocstyle
     "F401",   # unused-import
+    "T201",    # flake8-print
 ]
+
+[tool.doc8]
+max-line-length=128