Download the 'classic' argo data with physical variables only

… from all profiles

…rams

Need to dload additional params

Download the 'classic' argo data with physical variables only

… from all profiles

…rams

Need to dload additional params

# Conflicts:
#	icepyx/quest/dataset_scripts/argo.py
#	icepyx/tests/test_quest_argo.py

…submitted)

… request

# Conflicts:
#	icepyx/quest/dataset_scripts/argo.py

Draft subpage on available QUEST datasets.

* Adding argo search and download script

* Create get_argo.py

Download the 'classic' argo data with physical variables only

* begin implementing argo dataset

* 1st draft implementing argo dataset

* implement search_data for physical argo

* doctests and general cleanup for physical argo query

* beginning of BGC Argo download

* parse BGC profiles into DF

* plan to query BGC profiles

* validate BGC param input function

* order BGC params in order in which they should be queried

* fix bug in parse_into_df() - init blank df to take in union of params from all profiles

* identify profiles from initial API request containing all required params

* creates df with only profiles that contain all user specified params
Need to dload additional params

* modified to populate prof df by querying individual profiles

* finished up BGC argo download!

* assert bounding box type in Argo init, begin framework for unit tests

* Adding argo search and download script

* Create get_argo.py

Download the 'classic' argo data with physical variables only

* begin implementing argo dataset

* 1st draft implementing argo dataset

* implement search_data for physical argo

* doctests and general cleanup for physical argo query

* beginning of BGC Argo download

* parse BGC profiles into DF

* plan to query BGC profiles

* validate BGC param input function

* order BGC params in order in which they should be queried

* fix bug in parse_into_df() - init blank df to take in union of params from all profiles

* identify profiles from initial API request containing all required params

* creates df with only profiles that contain all user specified params
Need to dload additional params

* modified to populate prof df by querying individual profiles

* finished up BGC argo download!

* assert bounding box type in Argo init, begin framework for unit tests

* need to confirm spatial extent is bbox

* begin test case for available profiles

* add tests for argo.py

* add typing, add example json, and use it to test parsing

* update argo to submit successful api request (update keys and values submitted)

* first pass at porting argo over to metadata+per profile download (WIP)

* basic working argo script

* simplify parameter validation (ordered list no longer needed)

* add option to delete existing data before new download

* continue cleaning up argo.py

* fix download_by_profile to properly store all downloaded data

* remove old get_argo.py script

* remove _filter_profiles function in favor of submitting data kwarg in request

* start filling in docstrings

* clean up nearly duplicate functions

* add more docstrings

* get a few minimal argo tests working

* add bgc argo params. begin adding merge for second download runs

* some changes

* WIP test commit to see if can push to GH

* WIP handling argo merge issue

* update profile to df to return df and move merging to get_dataframe

* merge profiles with existing df

* clean up docstrings and code

* add test_argo.py

* add prelim test case for adding to Argo df

* remove sandbox files

* remove bgc argo test file

* update variables notebook from development

* simplify import statements

* quickfix for granules error

* draft subpage on available QUEST datasets

* small reference fix in text

* add reference to top of .rst file

* test argo df merge

* add functionality to Quest class to pass search criteria to all datasets

* add functionality to Quest class to pass search criteria to all datasets

* update dataset docstrings; reorder argo.py to match

* implement quest search+download for IS2

* move spatial and temporal properties from query to genquery

* add query docstring test for cycles,tracks to test file

* add quest test module

* standardize print outputs for quest search and download; is2 download needs auth updates

* remove extra files from this branch

* comment out argo portions of quest for PR

* remove argo-branch-only init file

* remove argo script from branch

* remove argo test file from branch

* comment out another line of argo stuff

* Update quest.py

Added Docstrings to functions within quest.py and edited the primary docstring for the QUEST class here.

Note I did not add Docstrings to the implicit __self__ function.

* Update test_quest.py

Added comments (not Docstrings) to test functions

* Update dataset.py

Minor edits to the doc strings

* Update quest.py

Edited docstrings

* catch error with downloading datasets in Quest; template test case for multi dataset query

---------

Co-authored-by: Kelsey Bisson <48059682+kelseybisson@users.noreply.github.com>
Co-authored-by: Romina <romina.piunno@gmail.com>
Co-authored-by: zachghiaccio <zhfair@umich.edu>
Co-authored-by: Zach Fair <48361714+zachghiaccio@users.noreply.github.com>

…ugh QUEST.

* add OA API warning
* comment out tests that use OA API

---------

Co-authored-by: GitHub Action <rwegener2@users.noreply.github.com>

---------

Co-authored-by: GitHub Action <jpswinski@users.noreply.github.com>

* add filelist and product properties to Read object
* deprecate filename_pattern and product class Read inputs
* transition to data_source input as a string (including glob string) or list
* update tutorial with changes and user guidance for using glob

---------
Co-authored-by: Jessica Scheick <JessicaS11@users.noreply.github.com>

* add kwarg acceptance for data queries and download_all in quest
* Add QUEST dataset page to RTD

---------

Co-authored-by: zachghiaccio <zhfair@umich.edu>

Co-authored-by: allcontributors[bot] <46447321+allcontributors[bot]@users.noreply.github.com>
Co-authored-by: Jessica Scheick <JessicaS11@users.noreply.github.com>

Co-authored-by: allcontributors[bot] <46447321+allcontributors[bot]@users.noreply.github.com>
Co-authored-by: Jessica Scheick <JessicaS11@users.noreply.github.com>

Co-authored-by: allcontributors[bot] <46447321+allcontributors[bot]@users.noreply.github.com>
Co-authored-by: Jessica Scheick <JessicaS11@users.noreply.github.com>