seq-data-to-lane-fastq.v0.2.0

• Release seq-data-to-lane-fastq.v0.2.0 (37b4b6e)
• Package seq-data-to-lane-fastq.v0.2.0.tar.gz (sha256: e4795cce52d097424ae249219e60a5efb1f3041deef6eaa1640194afeccba7bb)
• Package URI github.com/icgc-argo-workflows/dna-seq-processing-tools/seq-data-to-lane-fastq@0.2.0
• Run the package: nextflow run icgc-argo-workflows/dna-seq-processing-tools/seq-data-to-lane-fastq/main.nf -r seq-data-to-lane-fastq.v0.2.0 -params-file <params-json-file>

seq-data-to-lane-fastq.v0.1.0

• Release seq-data-to-lane-fastq.v0.1.0 (edd1ba4)
• Package seq-data-to-lane-fastq.v0.1.0.tar.gz (sha256: 607291ff9849733becd28877229ea73ea2ebb9a5aeb92a3f9399eb68b3cdf267)
• Package URI github.com/icgc-argo-workflows/dna-seq-processing-tools/seq-data-to-lane-fastq@0.1.0
• Run the package: nextflow run icgc-argo-workflows/dna-seq-processing-tools/seq-data-to-lane-fastq/main.nf -r seq-data-to-lane-fastq.v0.1.0 -params-file <params-json-file>

cram2bam.v0.1.0

• Release cram2bam.v0.1.0 (654df1d)
• Package cram2bam.v0.1.0.tar.gz (sha256: 2e076fc2e41a4077587a765c05f9b6a876312110eb8ca9ef8a28c75f4f82ad17)
• Package URI github.com/icgc-argo-workflows/dna-seq-processing-tools/cram2bam@0.1.0
• Run the package: nextflow run icgc-argo-workflows/dna-seq-processing-tools/cram2bam/main.nf -r cram2bam.v0.1.0 -params-file <params-json-file>

bwa-mem-aligner.v0.2.0.1

• Release bwa-mem-aligner.v0.2.0.1 (b63232a)
• Package bwa-mem-aligner.v0.2.0.1.tar.gz (sha256: 5999819a09f28d846ace41fbac57645446e068ad589be48450441dc7013542db)
• Package URI github.com/icgc-argo-workflows/dna-seq-processing-tools/bwa-mem-aligner@0.2.0.1
• Run the package: nextflow run icgc-argo-workflows/dna-seq-processing-tools/bwa-mem-aligner/main.nf -r bwa-mem-aligner.v0.2.0.1 -params-file <params-json-file>

bam-merge-sort-markdup.v0.2.0.1

• Release bam-merge-sort-markdup.v0.2.0.1 (0e52330)
• Package bam-merge-sort-markdup.v0.2.0.1.tar.gz (sha256: 8ef837cfa21f7bf4daf041218da80855f0848b9f96fad75f0348eae4aa24f42d)
• Package URI github.com/icgc-argo-workflows/dna-seq-processing-tools/bam-merge-sort-markdup@0.2.0.1
• Run the package: nextflow run icgc-argo-workflows/dna-seq-processing-tools/bam-merge-sort-markdup/main.nf -r bam-merge-sort-markdup.v0.2.0.1 -params-file <params-json-file>

bwa-mem-aligner.v0.2.0

• Release bwa-mem-aligner.v0.2.0 (ab6282b)
• Package bwa-mem-aligner.v0.2.0.tar.gz (sha256: fe16647bcb3ea14438f8d5fea1cb6c1eace948d161475858df7461695c4e9c54)

bam-merge-sort-markdup.v0.2.0

• Release bam-merge-sort-markdup.v0.2.0 (96698e9)
• Package bam-merge-sort-markdup.v0.2.0.tar.gz (sha256: 3ded53d2bb52a9ceaea628d9f8f9fd022e3102a3f885993d8d77aac7103c78c2)

bam-merge-sort-markdup.0.1.11.0

• remove options to output both bam and cram
• convert to compressed bam

seq-data-to-lane-bam.0.3.3.0

• able to properly handle the situation read group in different input BAM with the same RG ID

bwa-mem-aligner.0.1.12.0

• able to properly find corresponding read group in metadata for input lane BAM even when same RG ID exists in different original BAM